RNA id: XM_043255372.1


Basic Information

Item Value
RNA id XM_043255372.1
length 2300
RNA type mRNA
GC content 0.51
exon number 25
gene id blnk
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20662202 ~ 20686920 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACATTGTTCAAAGCACCAGTGCAGAGAACCAGATGTGAGCTCactttacatattttattgctTCCTGTTGGGAGAAAAACTCCTAAGACGCGGCCATCTAAAACCTGTGTTTTTCCCACACAGAGAAGAACTTCGCTTTAAAAAGCCATTCATTCTCAGTCCTCGCGCACTTTTAAGTGGCCTCAAAATCGCACGTCTGTCGAAATAGGCAGCTGTGGCTTTCGTTACCTACATAAATGAATTCGCCGTCACAGTTTTCTGTCAGAGAAGTGTGAGAAAATAGCCGCAGAGGGTCAGTTACCGTCAAGAGGAACTTCCTATGTTGCGTGAACTTGCCTCATGCGAGAGATAAAGAGCGGCGAGTCACCATCAGAGCTGGTCTAGACGACGGACAGGGATGAGCGTACCGACCCGAGAGCAATGTGAGGGCTGGAGTCCAGCGCAGGTCGCCGCTTTTCTGAGTCAGCACAACATGAAAGAGTGTGCGGACGCCGTGCAGAGGAACAGGATCGACGGCGCTCGCTTTCTGACGCTCTCAGACGCTGACCTCAACAAATTCAGCTTCATCCATCGGCCGCAGCTCCAGAAGATGGTCCAAGACATTAAAAAGAACGAGGACAGCCTTTTCAACAGACTCAAAAGGTTTCAGACCGAGCAAACGGCTAATATCCTGAAAACTGGGAGAAATACACTGGACCGAATGAAGAAGAAGAGGCCTCCGAAGGTACCGGTGCGAGACTATCAAGGTGAAGCTCCGGATTCGGAGAACGACTCTTATTCAGATTTTGACAGCGATACGTACGAGGATCCTCAGGGAGACCATGACGATAACTATGAGCCTCCGCCGAGGCTCGAAGGACACTTGAAGGCCTTCGGGGTCAGCCCGTCCATCAGCAGCCCCAGGGGAGAGTATGTGGACAGCAGCCGCGGAGGACCGGCGAAAGCAAGCCAGGCTTCCCGCGCGCAGCAGAGACCCAGACCCCCGCGAGCGGCCGACGACGACGACGGCGATTACATCGAGCCGGAGGACAAGGCGGACGACGATAATTACATTGACCCCACTGAGAAAACACTAGCAAAGCCGCTGATTAACCGAGGAGTCAAACCCTGCTTCCCCGCTCGCGTCAACGGCCCGGatttctatGAGGTTCCTGATATGAAGGAGAGTTCTCCGTCTAAGAAAAGGAGTAACTCGACCCTGCAGCCCAACACACATACAGCGCCACCTAAAGCCAGTCCACGaattaccCCCAGAAAGCCAACAATAACTCCACAGGAACCGCAGTCAGAGGACGAGTATGAGGTGTGTGACGCAGACGAGGGTGTCAGCGAAGGGCCAGAAACGACCACAGAGACCCGGAGATCATCAATGCCCAAGCCTCGACCTAGAGACCTGAAGAAGCCTAATGCTGTTTTCACACCGaagtCAAACGTTGCTCACAGAGACAGCGAAGCCACATCTAGTAAAACAGCGCCAGTAACTACATCACGAAGCCCCCTGGACACCATGCAGAGCCTGACACCAACAGGGTTCCATCGAGCcaaGATGCCTCTGCCTCGACAGCTTCCCTCCCAAAGCAGAGGGGCGTTGCCTTCAGACAGCAGATCAGCTAGAGACGCCGAAGAGGACGGCTCTTTTCTGCTCAGGAAGAGCTCCGGTGTGGACGCGCAGCAGCCCTACACACTGGTGGTGTTCTACAACAGCCGAGTTTACAACATCCCCGTCCGCTACATCGCTTCCACCAAACAGTACTCTTtggggaaagaaaaacaaggagaggagcgTTTCAGCAGCGTCTCGGACATCATTGAGAACCACCAGAGGAATCCTCTAGTGCTGGTCGACTCACAAAGCAACACCAAAGACTCCACCAAACTCAGACACGCAGTCAAGCCGTGACGAAGAGGCGCCAAAACCAACCTGAAGACGCTCGTGCCAATCGAGAGGGTGCTGACGTTCATTCAGCCGTGTGGTAGTTTCACATCCTACCTTTAACAGACGATGGAAACAGATCTACGCTTGCGAAGCTGGGACTTGCTGCTACTTTTATAACTTATTTTTCCGAACGACGGGTCGGAGGCCGCTGGCACAAGATGCAGGTCCTTACGTGacgaaattttttaatttttttaaatgttgaaatacaGCGCAGAAGAACGAGTTTTGTGCAAACCTTCATGAAAAAAACAGTTGTGTAAAGATATAAGCATGCGTGGTACAGCTGTACAGTTTATATATGCTCATGGGTGTATGAAACGTGTTTTAcctaacagtaaaaaaaacctttttaattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141283 lncRNA downstream 38972 20621262 ~ 20623230 (-) False G95535
TU141279 lncRNA downstream 39059 20621262 ~ 20623143 (-) True G95535
TU141285 lncRNA downstream 41483 20620047 ~ 20620719 (-) True G95537
TU141256 lncRNA downstream 142109 20518600 ~ 20520093 (-) True G95524
TU141247 lncRNA downstream 146891 20514773 ~ 20515311 (-) True G95519
TU141307 lncRNA upstream 141858 20828778 ~ 20829053 (-) True G95549
TU141397 lncRNA upstream 160377 20847297 ~ 20926743 (-) True G95623
TU141417 lncRNA upstream 289359 20976279 ~ 20976497 (-) True G95635
TU141424 lncRNA upstream 309163 20996083 ~ 20996511 (-) True G95640
TU141425 lncRNA upstream 312120 20999040 ~ 20999265 (-) True G95641
XM_043255381.1 mRNA downstream 10647 20645694 ~ 20651555 (-) True ccnj
XM_043255380.1 mRNA downstream 16864 20624977 ~ 20645338 (-) False herc4
XM_043255377.1 mRNA downstream 16865 20624977 ~ 20645337 (-) False herc4
XM_043255378.1 mRNA downstream 16868 20624977 ~ 20645334 (-) True herc4
XM_043255376.1 mRNA downstream 17568 20624977 ~ 20644634 (-) False herc4
XM_043255989.1 mRNA upstream 257664 20944584 ~ 20946525 (-) True vent
XM_043256148.1 mRNA upstream 261067 20947987 ~ 20949698 (-) True vox
XM_043254782.1 mRNA upstream 268547 20955467 ~ 20997713 (-) True LOC122356249
XM_043255253.1 mRNA upstream 340845 21027765 ~ 21042154 (-) False LOC122356507
XM_043255251.1 mRNA upstream 350065 21036985 ~ 21042123 (-) True LOC122356507
TU141260 other downstream 90640 20570038 ~ 20571562 (-) True G95526
TU141237 other downstream 165338 20493642 ~ 20496864 (-) True G95511
TU141235 other downstream 170126 20488785 ~ 20492076 (-) True G95510
TU141250 other downstream 175498 20479925 ~ 20486704 (-) True G95520
TU141433 other upstream 320552 21007472 ~ 21180217 (-) True G95646
unassigned_transcript_1931 other upstream 726880 21413800 ~ 21413871 (-) True trnag-gcc_70
unassigned_transcript_1932 other upstream 887331 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1933 other upstream 966692 21653612 ~ 21653681 (-) True trnag-gcc_72
TU141816 other upstream 1451409 22138329 ~ 22143970 (-) False LOC122357128

Expression Profile