RNA id: XM_043255378.1


Basic Information

Item Value
RNA id XM_043255378.1
length 4994
RNA type mRNA
GC content 0.49
exon number 24
gene id herc4
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20624977 ~ 20645338 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGCCGCAGCAGCTCCGCGTGCATGTGTCGTCACATCCGGCGTCACAAAGGCTCTGGAATATCGCCGTAGCTTCTCGTTCGTTCGGCTGCGTGTGTATTTAAGCGCGTGCTTCCCGCTCCTCGCGCTCTCTCGGTCTGTCATGACATTACAAAACACATCCGCGTTCACGTCCACGTCCACGTACGCGTAAGCTCCGGGAGCGTACACCGCATATCAACAGgtgtgtttgtgtgtgtatcggCGGAGGAGAGCGGGCACTCGGGCCCGTCGTCATGCTGTGCTGGGGAAACGCCTCGTACGGGCAGCTAGGTTTGGGTGGGATCGATGAGGAGATAGTGCTGGAGCCGAGGAAGTGCGAGTTCTTCGAGGGCAAGCGTGTGCGGGGTGTGGGATGCGGCAGACGTCATAGCGTCTTCCTGCTGGAGGACGGGACGGTGTACACCTGCGGCTGCAACGACCTGGGACAGCTGGGGCATGACAAAGCACGCAAGAAACCAGAACAGGTCATGTCTCTGGATGCTCAGAACATTGTGGCGGTGTGCTGCGGTGAAGCTCACACTCTGGCTCTGAATGATAAAGGACAAGTTTTTGCATGGGGCCTGGGCTCAGACGGGCAACTCGGCCTTTCAAACGTTGAAGATTGTATCCGTATacccagGACCGTCAAAAGTTTATCAGAGGTTCACGTTGCTCAGGTGGCCTGTGGATACTGCCATTCCCTCGCTTTAGCCCGAGGAGGTCAGATATTCTCCTGGGGCCAAAACAAATACGGACAGCTGGGGCTCGGGATGCACGGAGCCTGCGTCTCTTCCCCACAAGTCATTCAGTCTTTGCAGGGCGTCCCATTCGCCCAGATCTCCGCAGGGGGTGCTCACAGCTTCGGGCTCACGCTGTCTGGGGCCGTTTTCGGCTGGGGGAGAAACAAGTTTGGCCAGCTGGGCCTCAGCGACAACGACGATCGCTGTTTCCCTGCCTTGCTGAAGACGCTCAGGTCCCAGCGGGTGGTTTACGTAGGCTGTGGAGAGGACCACACGGCTGTACTGACAAAGGAGGGAGGTGTATTTACATTTGGAGCGGGTGGTTACGGTCAGCTGGGACACAACACCACAAACCACGAGGTGAACCCCAGGAAGGTGTTTGAACTCATGGGCAATGTGGTTGCACAGATAGCTTGTGGTAGGCAGCACACTTTGGCGTTCATCCCTTTATCAGGAAAGATTGACTCGTTCGGTCTGGGTGGTAATGGACAGCTAGGAACCCGCTCGACCTGCAACAGGATAAGTCCCGCCCCTGTGAAGGGCTGCTGGAGAGCACATACTGATCCTGTGCCTATGGAAGGAGAGGCCGAGCAGAGTTTCTGTGTGAAGAGGATCTACGCTGGAGGAGACCAGAGCTTCGCTCACTACGCTTTACCTCAGGACGACAGCCCTGCCGTTGATCTGAGGATAACCAGACCTGATGGACAGATATACACACTCAGTGAAGACCTCATCCAAAAATGGCTCAATCACGGCCATGGGAGACTGTCACCGGAAATCACCAATGAGATCGATCTTGTGTTCTCTTCAGCAAGTTGTCTCAACGGAAGCTTTCTGTCTGGAAGTAATCCAGATCACTACAGCACTAACAGTAAGTGCTCAGGCGTAGACATTAACACGGCTCGCCTGCTCTACCACAGACTCATCCGGCCAGATTACCCACAAATCGCACAAATCGTAGCTGCTAGTTTGGAGAAGAACCTCCTCCCCAGACTGAGCAGCTCTCCTCCAGACATTGAGGCTCTGAGACTGTACCTCACGCTGCCCGAGTGTCCGCTCCTCAGCAACCCCAACAACTACACCACCCTCACCATTCCCTTCGCCAAGGCCGCCGTGAGCCTGAAGGACGCCCCCATCAGAGTGCTCGGAAACTGGTGGTCAAAGTTGGAGCCAGCGGTCTTCCAGAGGCTGGTGGAGCTGTACAAGGAGGTGGTGGTGTATCTTCTTCGCATGCAGAAACTGGGAATCCCCCTTTCTGAGCAGAGGATCTTCACCTGCTTCCTGCACACCTCGCTCAAGTTTTTGGAGATCCTGCACTCGGTTAATGAGCGTGCCGGCCAGATCATCCAGTATGACAAGTTTTATATTCATGAGCTGGATGAGCTCATCGACGTCAGGAATGATTACGTCACCTGGTTTCAGCAGCAGATGTTCTCTGTGGTCATGGACTCTCAGGTGACCATGTGCAAATACCCGTTTGTTTTTGACGCTCAGGCAAAGACGGCGCTGCTTCAGACCGATGCTGTGATCCAGATGCAGATGGCGGTGGATCAGGCTCAGAGACAGAACTTGCACTCTCTGTTCCTGTCCGGCGGAGGAGTGGAGTCTGTGAACCCCTGCCTCATCCTCATCGCACGGCGAGAAAATGTGGTCGGAGACTCCATGGAGGTGCTGAGGAAGTCCAAAAACGTTGATTACAAGAAGCCTCTTAAGGTCATCTTCGTCGGAGAGGAGGCCGCAGACGCTGGCGGTGTGAGGAAAGAGTTCTTCCTGCTCATCATGAAAGAACTCCTGGATCCTAAATATGGGATGTTCAGATATTACGAGGAGTCCAGACTCATCTGGTTTGCTCACAAgACGTTTGAAGACATAGATCTGTTTCATCTGATCGGTGTGGTTTGTGGATTGGCCATCTATAACCTCACTATAGTGGAGCTGAACTTCCCATTAGCCCTGTACAAGAAACTCCTGAAGAGAACTCCCACTCTAGAGGACCTAAAGGAGCTCATGCCTGATGTAGGAAGGAGTCTTCAGCAGCTGCTGGATTATACGGAGGATGATCTGGAAGACGCTTTCTGCCTGAACTTCACAATCACCGAGGAAATTTTTGGCACCACTGAGGTACTGGAACTGGTTCCCAACGGGACAGACATCAGCGTCAACAAGTCCAACCGGCAGGAGTTTGTCAATGCCTACGTCGATTATATATTCAACACCTCCGTGGCTCCTCAGTTCAGCGCTTTCCACGCGGGCTTTCACAAAGTGTGCGGAGGGAAGGTTCTCGAGCTTTTCCAGCCCAGCGAGCTGCAGGCCATGGTCATAGGAAACACCAATTACGACTGGAAGGAGTTGGAGAAGAGCACAGAGTATAAGGGCGAGTACTGGGCCGATCACCCCACCATCAAGATATTCTGGGAAGTGTTTCACGAGCTGCCTTTGGAGAAGAAGAAACAGTTCCTGTTGTTCCTCACGGGCAGCGACCGGATCCCCATCCTGGGCATGAAGAGCCTGGCGTTAGTGATCCAGCCCACCGGCGGAGGAGAGCAGTACTTCCCTGTAGCGCACACATGCTTCAACCTGCTGGACCTGCCCAAGTACTCGAATAAGGAGACGCTCAAAGAGAAACTGCTGCACGCCATCGAACACAACCAGGGCTTCAACCTCGTGTGACGCACAGGTACCACACGCTCCAGCCTGCGGGGCTCGGTGTGTGACTGCTGCCTTCTGAACCCTTTTCAAAATTAGCGTAGAAATGTTGTTTATGCGTCTGAATGATCATCGGTTACAAGTCGAATGAAAGCGCTTATCTGCGAATACAGTGTCCCAGTGGGACTGAAATATGTGAACAGTATTTGTGTATCAGATTTTTGTTACTTACTCAAAGTTTGGGTGATGCTGAGCATTAAACAACAACTTCATTTTATtcctatctttttttctttctttttttttttgcaggaataGTGCACCTTAAAATGTAGCGTAAATTGAGTTTTTCTTCATCGgcgtctcagcaatggatgtgaatgggtgccgtcagaatccaaacagctgatttaaaCACGTCGCAATAATCcgcagcactccagtccatcagttaacatctggagaagactaAAGATGAAACGAATCCAGGtgtttttaactgaaattattATGGAGTCCGCAATCCATAACAAAGAGTGTCCCGTTGTCTCACGGACATCGAATCAGTTGCGTCTCCTCCTCAAGACGTTAACCgatggactctcattctgacggcacccattcgcatcCATTACTCAGACACCGGTGCAAACGCATTTCTCCgcatctgatgaagaaacgaacTCTTCCAGATCTCGGATGAGGACGTTTTTCGGCTAATATTCATTTCTGTAACCTTTTAAACGCACTACAGTAAGGTTCTGTACGTTTAACATAAGCATAACGAACGACtacattttacagaatttattacatttataaatcataCCATTAAACCATAAATGAATAACGTGAATGTTATAATTACTCATTCAAAATGCATGAACTACTGTTACATTGCTATtaaaatttatatgtaaaaattacaCTGGAATTAATGCTATGGTTTATTGTTAATGATGACGgtattaactaatgttagcaTATACAATCTTCTTTTATAGTGTTAACTGAGACTtggaattactttttttttttttttttttttttttcattttcattacatagaatatgatttttattctaAATGACTTCAAGGAAATGcctcacttttttaaaaacgtttcgGCGTATTGTTCAGATTCACTTCAGAGGAAGCGGATGGATACTGATGCAGAATCGTTTCGTTCGGAGGAGGACCGCTTCTGTGTCGTGTGCCTtaactgaaaacacacatgaaTAGATCGTTttggcctctttttttttttttagcttcaagTTTTGAGTAAGTATCAAAATCTGAAGAACGTGTCTTAATGAAGTTGGTGTACTGGAGTGGCAGTGCAAAGTCTTACGGTTGCTGAGAAGTTTGCATGATCACGGGTCAAATATAACGCCAATGATAGCATTCTGAGTAATAATTTATGTCCAATAGAAATAAGTAAGCTTGATGATTGGAGTCGACACACACGTGTTTCTACTGTGTGAGCTTCTAGTTGCTGTGCCATTTGTGTGAGTGATGAGAGAAGCAaccaaacatgacattttttctgtgtttgtaaattgtaaataaacacctttttttctA

Function

GO: NA

KEGG:

id description
K10615 HERC4; E3 ubiquitin-protein ligase HERC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141283 lncRNA downstream 1747 20621262 ~ 20623230 (-) False G95535
TU141279 lncRNA downstream 1834 20621262 ~ 20623143 (-) True G95535
TU141285 lncRNA downstream 4258 20620047 ~ 20620719 (-) True G95537
TU141256 lncRNA downstream 104884 20518600 ~ 20520093 (-) True G95524
TU141247 lncRNA downstream 109666 20514773 ~ 20515311 (-) True G95519
TU141307 lncRNA upstream 183444 20828778 ~ 20829053 (-) True G95549
TU141397 lncRNA upstream 201963 20847297 ~ 20926743 (-) True G95623
TU141417 lncRNA upstream 330945 20976279 ~ 20976497 (-) True G95635
TU141424 lncRNA upstream 350749 20996083 ~ 20996511 (-) True G95640
TU141425 lncRNA upstream 353706 20999040 ~ 20999265 (-) True G95641
XM_043255900.1 mRNA downstream 8565 20607257 ~ 20616412 (-) True sirt1
XM_043256163.1 mRNA downstream 18471 20598724 ~ 20606506 (-) True cacul1
XM_043255696.1 mRNA downstream 28988 20575578 ~ 20595989 (-) False mypn
XM_043255695.1 mRNA downstream 28991 20572320 ~ 20595986 (-) False mypn
XM_043255381.1 mRNA upstream 360 20645694 ~ 20651555 (-) True ccnj
XM_043255372.1 mRNA upstream 16868 20662202 ~ 20686920 (-) False blnk
XM_043255370.1 mRNA upstream 16868 20662202 ~ 20686917 (-) False blnk
XM_043255371.1 mRNA upstream 16868 20662202 ~ 20686916 (-) False blnk
XM_043255373.1 mRNA upstream 16868 20662202 ~ 20676626 (-) True blnk
TU141260 other downstream 53415 20570038 ~ 20571562 (-) True G95526
TU141237 other downstream 128113 20493642 ~ 20496864 (-) True G95511
TU141235 other downstream 132901 20488785 ~ 20492076 (-) True G95510
TU141250 other downstream 138273 20479925 ~ 20486704 (-) True G95520
TU141433 other upstream 362138 21007472 ~ 21180217 (-) True G95646
unassigned_transcript_1931 other upstream 768466 21413800 ~ 21413871 (-) True trnag-gcc_70
unassigned_transcript_1932 other upstream 928917 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1933 other upstream 1008278 21653612 ~ 21653681 (-) True trnag-gcc_72
TU141816 other upstream 1492995 22138329 ~ 22143970 (-) False LOC122357128

Expression Profile