RNA id: XM_043255448.1


Basic Information

Item Value
RNA id XM_043255448.1
length 3448
RNA type mRNA
GC content 0.49
exon number 15
gene id klc1b
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22231449 ~ 22250313 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGGCGCGTGTGCGCATGCGCAGTGTCACATCCACCGTGGACATCTTGGAATTAAAGGGGCGCCGAGCGATTCCTGACAAAAGCAACACTTTCAGGCGCTCGTCTCTGGATCATGTCCACGATGGTGTACCCTCGTGAGGAGAAGCTGGAGAAGCTGTCTCAGGAGGAGATCATCTCTAACACCAAGCTGGTGATCCAGGGCCTGGAGGCGCTGAAGAACGAGCACAACTCCATCCTGCACAGCCTTCTGGAGACCATCAAGTGCCTGAAGAAGGACGAGGAGGCCAGTGTGGTGCACGAGAAGTCCAGTCTGCTGCGCAAGTCTGTGGAGATGATCGAGCTCGGGCTGGGCGAGGCTCAGgtgatGATGGCTCTGTCCAATCATCTAAACGCGGTGGAGTCTGAGAAGCAGAAGCTGCGGGCTCAGGTCAGGCGTCTCTGTCAGGAGAACCAGTGGCTGAGGGACGAGCTGGCCAACACCCAGCAGAAGCTGCAGAAGAGCGAGCAGAACGTGGCAcagctggaggaggagaagaagcaCCTGGAGTTCATGAACCAGCTCAAGAAGTACGACGAGGACGTGTCTCCTTCGGAGGAGAAGGACGGTGAACCGCCGAAGGACTCTCTGGACGATCTCTTTCCTAACGATGAGGAGGAACACACTCAAGGAATGCAGCAGCAGCACAACAGCGCGGCGGTGGCGGCGGCTCAGCAGGGCGGCTACGAGATCCCGGCCCGGCTGAGGACGCTCCATAACCTGGTGATCCAGTACGCCTCGCAGGGCCGCTACGAGGTGGCTGTGCCTCTCTGTAAACAAGCCCTGGAGGACCTGGAGAAGACCTCGGGACACGACCACCCCGACGTGGCCACCATGCTCAACATCCTGGCCCTCGTGTACCGggaTCAGAACAAATACAAGGAGGCCGCTCACCTGCTGAACGATGCTCTCTCCATCAGAGAGAAAACTCTGGGCAAAGACCACCCTGCTGTCGCTGCCACTCTTAATAACCTGGCGGTGCTGTACGGGAAGAGAGGCAAGTATAAGGAGGCTGAGCCGCTGTGCAAACGAGCTCTGGAGATCCGAGAGAAGgtgctGGGGAAGGATCATCCTGACGTGGCCAAGCAGCTGAATAACCTGGCGCTGCTGTGTCAGAATCAGGGCAAGTACGAGGAGGTGGAGTATTATTACTGCAGAGCTCTGGAGATCTACGAGTGCCGGCTCGGCCCGGATGACCCCAACGTGgccaaaaccaaaaacaacctgGCGTCCTGCTTCCTCAAACAAGGCAAATACAAAGAAGCGGAGGTTCTGTATAAAGAGATTCTGACCCGTGCTCATGAGAAGGAGTTTGGCTCAGTGGACGCCGAAAACAAACCCATCTGGATGCACGccgaagagagagaggagatgagcaagGGGAAGCACAGAGACAACATGCCATACGGTGAATATGGAGGCTGGTACAAAGCCTGTAAAGTCAACAGCCCGACGGTCAACACAACGCTGAGGAACCTGGGAGCTCTGTACCGCAGACAGGGCAAGCTGGAGGCAGCCGAGACACTGGAGGAGTGTGCTGTGAGGTCCCGCAAAcagAGCAACTCTGGTCTGGACCCGGTCCAGCAAACCCGTGTGGTGGAGCTGCTGAAGGAGGACGGACGGCGCAGCAGAGACAGTCTGTCCAGTGTGAAGTACGAGAGCGGCTCTGAGGCCGGGGATGAAGCATAAAGCCGTGCAGagtttcttcatcttcttcctcctcacaCAGGAAGGGCCGTGTTTGTTAGTTTTCTCTGGACGTTGATCCTGGGCAGAAGGACGCGTCTCTCCTCAACCCCGCTTCTTCTGTTCTTTCTTCGGTTGATGTGACGATGTCTTTGGGCTcttcatcttctctctctctcatctctgaCGTGTTGATAATCGATGTCGACACTTTCATCTATCGCCGTTTCATCGCGGCCTCGCCGATGATGTGTGACTTTCAGACTGAACTCTTAATTCTGCAGATTTGATGGTTTTGCTCTTTTTGCTGTCCGTGTGTTTGAGCAGCTTCTGCTGGTGAACAATCAtctgtgtttcacagaaacTCGCTCTTGATGCTTATGTTTTGTAAGATATGATAAATGATGATTTCGTGTGGCTTGAGCACGTCCGAAACGAACAACAGACGAACATCACGGACGCTTTCTCTTGTGCTCCAGTGTCAAAGTAATGTTTACAGTCATTAAAGCTTGCGGTGGGTTTGATGAATGAGGCGGCAGTGGACACGCTTGAGTTCTGGGAATTATACATCGAACGGAAGCTTGATTCCGCCACAcagttaaagtaaataaaaaggtaattacaactttttatctcacagttctgaatTTATGACTTTGTATAAGAATTGTGTGACGTAAACACAGCTCAAAATTGTGGACAAGCGTAAAAAGTAACTATAGTAACACAAATTCGAATTGTGAAACAAACGCGTGACGTAAACTCAACTGCCAAAACAAGTGtagaattacaaaataaaaccaaactgaaaacgtaactataataataaaaatacgtAACTGACCAAATTAACAGACATGAGCGATATAAACTCGATATTGTAAAACAAACTCAGGATCGCGATTAATTGAGGCGTAGAACTCTTAGCTGCGAAACAAATTCGtaattggaaaataaaaagtacgAATGAActaaaaattgctaaataaatcgTAACCAAAtcgtataaatattttaattgtaaagtgAAGtctgaattacaaaaaaaagttcttaatGGTGAGATAAACATTCgcaattacgtttttttttttttttttatgtgattgcATAAACAAGCTCGCATATCTATCATCTATTACACGAACGAGTCTGACTCTTTGAGCTCGTGCTCACGGTCTGGTCCAGATCTTCATGTTTCAGCTGTAAAGGGAACAGTATGGAGTCGTCGGTATTCAGAACAGTTCAGTCGTTCGTTAGACTCCAGACACGTGACGTTCGGTGACTGAGGATCAAATGTAAAGTGTGTTAAAAGACAAACGCagaggtgtttttttatttagcgcttttaacaatccAGAGTGTGTCAAAGCAGCCGTTCAGTATTAAATAAGAAGTGTGTGAATAATGCACAAGGACAATAGTGAAGGTCTCAGTCGAAGGCAGATCGTCGGCGTCGCGGTTCAGTTCAGATTAAAAACAGTCTGCACAATCAAGTCCGATCTAATCCTTCAGCAGAGATCCTCACGCTCCGTACAGAGCCTTAAAGAAGCGCGGCAGCAGCCGACGGGAGTGAGCGCCAGGCCTTGATTATTAGCCGTTTCCACTGACGACGGTCGTTTGATTCattccagacacacacacacacacacacacacacacacacacacacacacacacgatgatgatgatgatgatgatgatgatgatgatgcagtacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141833 lncRNA downstream 3253 22228184 ~ 22230539 (-) True G95933
XR_006252426.1 lncRNA downstream 91020 22137388 ~ 22142772 (-) True LOC122357128
TU141813 lncRNA downstream 97401 22135936 ~ 22136391 (-) True G95922
TU141782 lncRNA downstream 113350 22114696 ~ 22120442 (-) True G95902
TU141784 lncRNA downstream 193686 22039782 ~ 22040106 (-) True G95903
TU141836 lncRNA upstream 46028 22296341 ~ 22297227 (-) False G95936
TU141845 lncRNA upstream 52992 22303305 ~ 22303781 (-) True G95941
TU141840 lncRNA upstream 56755 22307068 ~ 22370625 (-) True G95938
TU141853 lncRNA upstream 63343 22313656 ~ 22483219 (-) True G95949
TU141854 lncRNA upstream 63343 22313656 ~ 22315134 (-) False G95949
XM_043254790.1 mRNA downstream 6788 22185040 ~ 22227004 (-) True ptk7b
XM_043254898.1 mRNA downstream 50618 22157665 ~ 22183174 (-) False srfb
XM_043254899.1 mRNA downstream 50619 22157665 ~ 22183173 (-) True srfb
XM_043256219.1 mRNA downstream 76948 22152035 ~ 22156844 (-) False tmem254
XM_043255712.1 mRNA downstream 182106 22041455 ~ 22051686 (-) True pwwp2b
XM_043255402.1 mRNA upstream 3866 22254179 ~ 22283646 (-) False zmp:0000000755
XM_043255400.1 mRNA upstream 3866 22254179 ~ 22283642 (-) True zmp:0000000755
XM_043255401.1 mRNA upstream 3866 22254179 ~ 22283636 (-) False zmp:0000000755
XM_043254650.1 mRNA upstream 66927 22317240 ~ 22323509 (-) True slc30a10
XM_043254651.1 mRNA upstream 76392 22326705 ~ 22329292 (-) True ypel5
TU141795 other downstream 76933 22151742 ~ 22156859 (-) True tmem254
TU141794 other downstream 76968 22151742 ~ 22156824 (-) False tmem254
TU141816 other downstream 89822 22138329 ~ 22143970 (-) False LOC122357128
unassigned_transcript_1933 other downstream 580111 21653612 ~ 21653681 (-) True trnag-gcc_72
unassigned_transcript_1932 other downstream 659471 21574251 ~ 21574321 (-) True trnag-gcc_71
TU141837 other upstream 46028 22296341 ~ 22297227 (-) True G95936
TU141850 other upstream 76397 22326710 ~ 22329260 (-) False ypel5
TU141887 other upstream 121254 22371567 ~ 22438998 (-) True LOC122356262
TU141882 other upstream 128779 22379092 ~ 22443286 (-) False LOC122356262
TU141894 other upstream 170623 22420936 ~ 22422869 (-) True G95972

Expression Profile