RNA id: XM_043255475.1


Basic Information

Item Value
RNA id XM_043255475.1
length 5908
RNA type mRNA
GC content 0.43
exon number 22
gene id pde10a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23332820 ~ 23416851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCCCGGGAACACGTGATGCGCAAATCACTTTTGTAGCAACATCTCTCATTTGTCAGGGGAAAATCCGTGCGTGTTTCTTATGCTTTAAGCCCGAAGCTTAACATATTTGAGGGGtttttcgttttcatttttttttcttttaatattcagTAATTCACACATTGCATTGCCAGCATCATCACTCGCGCACCATGCCAACTTTTGCTCCCGTTGCGTTTGTCTCGTAGTGAGAGAGAATTGCAAACTGTGGACGCCTGAATGAATGGGGATCGTGCTTTGCGAAGATTTCAACTGTCAACATCCTACCAGTTTTATGTGCTTGTCCGGACAAGCGAGTGTTTGTCGTCCTCGTTCGTATATCCGTTTCGAACCAAGAACGAACAGACAACAGAGAACGCGTCGTGTTAGACCGCCAATGTCGAAGAAACGCAAAACTCCAGAcgacggcggcggcggcggcggcgagGATTCCCTTCAAGAAGGTCTGACGGATGAGAAAGTGAAGGCTTATCTCTCGCTCCACCCGCAGATGCTGGATGAGTTTGTGTTGGAGAGCGTGAGTGCAGAGACTGTAGACAGATGGCTGAAACGAAAGAACAGCAGCCAACCTGCAGATGAATCTTCAGCTAAAGAAGTTAGCAGGTACCAGGACACGAATATGCAGAGCGTCGTATATGAGCTCAACAGCTACATGGAGCAGCGGCTGGACACTGGAGGAGACAACAAACTACTGCTCTATGAGTTGTGCAACATCATCAAAACAGCCACAAAAGCTGATGGATTTGCACTTTACTTCCTTGGAGAATGCAACAATAGTTTATGTTTGTTCACTCCGACGGGGGCAAAAGAGGGGCTTCCTGGGCTCATCCCCTCTGGTCCCATCACATTTGGGACCACCATCGCCGCTCACGTTGCAAAGACACGCAAGACACTACTTGTAGAGGACATCATGGGGGATGAGAGGTTTCCTCATGGCACAGGGCAGGACTCAGGGATTCGTGTACATTCTGTTTTGTGTCTACCCATCCTCACCGCCATCGGAGACCTCATTGCTATCCTGGAGCTGCACCGGCACCTGGGCAGAGAGCCCTTCAACCTCAGCCACCAGGAGgttgcAACAGCAAATTTGGCCTGGGCGTCTGTAGCTATACACCAAGTCCagGTCTGCAGAGGTCTTGCCAAACAGACAGAACTTAATGACTTTCTCCTAGATGTGTCAAAAACATACTTTGACAACATAGTGGCAATAGATTCTCTACTTGAACATATCATGatATATGCAAAAAACCTGGTTAATGCAGACAGATGTGCGCTCTTCCAGGTAGATCACAATAACAAAGAGCTGTACTCTGACCTGTTTGATATCGGGGAGGAGAATGAAGGGAAACCCGTCTTTAGGAAAACCAAAGAAATTAGGTTTTCTATAGAGAAAGGTATAGCAGGTCAGGTGGCGAGAACAGGAGAAGTTTTGAATATTCCAGATGCCTATGCAGACCCCCGTTTCAACAGAGAAGTAGATCTCTACACTGGCTACACGACGCGGAATATCCTGTGCATGCCCATAGTCAGCCGTGGGACTGTGATTGGTGTTGTACAAATGGTGAACAAGCTGGGAGGAAGTGCCTTCACTAAAACTGATGAGAACAACTTTAAGATGTTTGCCGTCTTCTGTGCTTTGGCCTTACACTGTGCAAATatgTATCACCGGATTAGACATTCAGAGTGCATTTACCGGGTGACGATGGAGAAGCTTTCGTACCACAGCATCTGCACGTCAGAGGAGTGGAAGACCCTCACACAACTCTCCCTCCCTTCAGCCATATATAAAGAGATCGAACTGTTTCACTTTGACATCGCTCCTTTTGAGGAACTGTGGCCTGCGATATTTGTATATATGGTTCACAGTTCATGTGGAAAAACCAGCTTTGAGCTGGAGAAACTGTGTCGCTTCACTATGTCAGTGCGGAAAAATTACAGACGCGTTCCATATCACAACTGGAAGCACGCTGTGACGGTGGCACACTGCATGTATGCCATCCTGCAAAAAACCACTGGGATCTTCACTGAGCTTGAGAGGAAAGGCTTGCTGATTGCCTGTTTATGTCATGACCTGGACCACCGCGGTTACAGTAACAGTTATCTACAGAAGTTTGACCATCCGCTGGCTGCCCTGTATTCCACATCCACCATGGAACAGCATCACTTTTCACAGACTGTGTCCATCCTGCAGCTGGAAGGGCACAATATTTTCTCCAACCTGACTTCCAGTGAGTATGAGCAGGTGCTGGAGATCATCAGGAAGGCCATCATTGCTACGGACCTCGCCTTGTACTTTGGCAACCGCAAACAGCTCGCTGAACTGCTGGCCACAGGAGCCCTGGACCTGAACAACCGTGCtcacagGGATCGTGTGATCGGTCTGATGATGACAGCCTGTGATCTCTGCTCTGTGACCAAACTGTGGCCCGTCACACGACTCACGGCCAATGACATCTATGCTGAGTTTTGGGCTGAGGGGGATGAAATGAAGAAGATTGGAATGCAGCCCATCCCTATGATGGACAGAGATAAAAAGGATGAGGTTCCCCAGGGACAGGTGGGGTTTTACAATGCTGTGGCTATTCCCTGTTATACCACCCTGTCAGAGCTGTTTCCTCCCTCCAACCCTCTGCTTACAGCCTGCAGGGAAAACCTGTCCCAGTGGGAACAAATCGTGCGGGGAGAGGACGCCTCCGCGTGGGCTCCCACCGAAGAGGCCGAGCTGAGCGAGACGTCAGACAGCGGACCAGTAAAAGTGGACAACTGAATCTGTGGCACCTGTCCCACAGCACCACCTACACCCTGCCAGAGACACTGGACTTCCTGTGGACAGTCCCACTTCCTGCGGAGACGGGAGGAAGCGCAGAGGGCAGGCGGGGGAAGGATACgttcaagaaaaataaacaaaacataatgttACCTCAGTGGGTGACGGAGGCGTACACGCTAATGACATCAGGGCTCCTTCGTTGATGGCTGGGACTCAAGTCCACTTCGGCAGAACGGCCATCATCACTGGCAGGAAGTTGCTTTCGCATCTTTactttttaagtgatttttttttttcttcttcttcttttttttcagtttctgttGCGGTCTTACATTTGAAGAGGCCTTAATACCGACCCGAGTTACGATCTGGTTGGGCGACTCGTAACTAAAAGGTGGCTCGTCTAGTTATAACGGTACTTTTTATCCTGCTGCGGTCAAAATACGCGAAGCTTACTTGAGcggatttattttttaagacagACGGAAAGAATGTTTTGTCGCAGTCGAGGAGGTGCACGAGGCACGGTAAACCCATCGCTCTGATGGacgttttaatataatattttgagcAAAAATGCTTTGTAGTACTTGAATGAAGAAATACAGCCTATTCTGAGTGGAGCTTAAAACAGAAATGCCTGAAGCGCGTCCTTCCAAATCAAAGAGCTTTTGTGATGGCATAAGTTTCACTCTGAACCTTACCGGAGTCACACACAAGTCACGGTGTTCTTCGCTGAGATCTCCAGCATCTTCCAACCTGATATGAAGTTTAACCCGTCGAAGCTCATGGAGctgttgacatttaaaataaggaATCAAAGGTTTGCGTTTTACcataaaaacatactgtaaatctTCAAAAAACAGAAGTCTTATAGAAACACCAACAAGAAAATCCATCTTTAATTATATGAATTGAATGTGATGGTTGTGAAATACTAAATTATGACTATATCAACATTATAAGTCAACCTCAGGgggaaaatattatataacttCTTTAAATCTTCACTATAAGAACCTGTGAGTGTGCATAGTAATTACTAAAGACTGAAAGAGGACTGATGACTAAACATACAGCAACTATACCTAAAATCAAAAGTCAAAATGTGCACAACCGAATTGATTGCTTGGTTTTGCTATCTTTTAACATGGGACCATTTCTGATTCTGAAAgtatttctattgttttcctcaaacattcattcattttatcgttattactactactacaccAAATCCGTAAGTTGATgcaaaatgaatgaacgaaCGAATGGATAAAAGATAAATGAGTATGTAgggaaataaaaagacaaatacgTATCTTATTtaaagatttgtaaaaaaaaaaaaaaaaaaagtatttgacaCTCCAGTTACTTAAATGGgtagttcatcaaaaaaaaaaaaaaatctaaaataaataactaaaattaatgTGCTGTTCCAATGCTGTTtcaccttctttctttttcaaaccaaataaaatgaaataataataataataatatttctaaaggTACTGTTCATGCTAATCCATATGCAACGCTTGCTAAATTTTCCATGTACTAAGAGCATATGATTTGgttgaaattattttagtaaattacTAACTTTGCACATTGTTTTacttaataaactaaataatgactaaatgttcatttctgggtgaCCTATCCCTTTAACTCTGTGAGCTAACCACTTTCAAAACACCCcacctttaaaagaaaaaataaaaataaaaaaaaaacactgacaaatcTTATCTTAGTAACTGGTGCATCCACCATAAAACCAGACAATCTCTTCCTCCTTTCTACTGTGAGTCTATGAGAATCCTTTTTGGAATCGTGTTTCGTTTCTTTAAAAGATTTTTCCACAGcacttaaaaatatctaaaaaatgaCAACGGAACAATAAACGCGTTGCATTCCCTTTtccaaacttaaaaaaaagccttgagAAGTTCATATTATAACTCTCGCTCCCAAATCATCATGATTCATAGTCTTCAAAGATTAtcgtttttgtttaattcaaaCATGTCTGCACACAAAATCAGCAGAGGAACGATGCTTTGCTCCAGTTTCTATGGGACGTTCTGTAAAGTTTTTAACCAGTGGGACGGTGCTTAGCAAAGGAGCCAAATGCACTTTCTGGAGAGTAACGTTCATGTTTTCTACATAAGTTGTCAAACGCAGGCTAAAGCGAATCTCAAGTTGTGACCCAACAGAAATATTTGCCATCAATGTCACGCCTTCGTTTCAAATGGCTGAACTCAGTTtcgtaatattttttaatttttttttttttttttttttctttatatctgTAAGAGGCACCTGCAGTCCCTGCAGACAGTGATGGAGCTCTGACTGACTGATGGCCTTCTGTAAATACTGCAGGACTGATGAGTGAATGTAATCAATACTGTCACAAACTGCTTCAAGATGCCTGTTAGTTTTTAAGTGTACCGAAGGTGTACACCGTCGGATATGGGAATGTTAAACATGGCTTCCAATGGTTGTGTCGGCATGCGACGTGCGCACTGTGTGTAGAGAGACCGAGTTTGGAGATGTAAGCTACGTTCTAATGGTGCTATCTTAGGCAGTCATGCACTTTCTGATCCTGTGTGCatgctagtgtgtgtgtgcgcgtgcgtgtgtgtgtgtgtgttctctctggAGTAATGCTACCAACCCCCATCTACTACGGAGTCCGAGTTGAGAGGATCTGTCCAGCACCCCTCACCTCTGTCACCAAGATCATCCACAACCAGTTGTCTTTCCCCTCATATGCACTATGTTTAgagactattattattgttattaatattattgctcctattatattattattgccacaattattgattattaccattgttattttgttaattagagttaaattttaaattaacttatattttttatacaaagtttagcatttttgttttgtacagaACAAATTGTACATTATGGAATAAAGCGAATGGTCATTTAGAGAAACTGCATACTGTTGCCCGAGATAAATGTCTCAACTCTAAATGTATGAGcagtaattacttttattaaatatttctgacaAATACAAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142128 lncRNA downstream 154724 23176802 ~ 23178096 (-) True G96117
TU142099 lncRNA downstream 178325 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA downstream 178325 23152205 ~ 23154495 (-) False G96108
TU142019 lncRNA downstream 302920 23017198 ~ 23029900 (-) True G96061
TU142018 lncRNA downstream 325357 23006279 ~ 23007463 (-) True G96060
TU142211 lncRNA upstream 23065 23439277 ~ 23443783 (-) False si:ch211-130h14.4
TU142295 lncRNA upstream 122566 23538778 ~ 23542300 (-) True G96254
TU142315 lncRNA upstream 511119 23927331 ~ 23928060 (-) True G96265
TU142336 lncRNA upstream 626316 24042528 ~ 24067735 (-) True G96279
TU142347 lncRNA upstream 653948 24070160 ~ 24070488 (-) True G96286
XM_043256000.1 mRNA downstream 2887 23324782 ~ 23329933 (-) True pla2g12b
XM_043256001.1 mRNA downstream 2888 23324782 ~ 23329932 (-) False pla2g12b
XM_043254695.1 mRNA downstream 94303 23183915 ~ 23238517 (-) False micu1
XM_043256098.1 mRNA upstream 8820 23425032 ~ 23429064 (-) False tbxtb
XM_043256097.1 mRNA upstream 8820 23425032 ~ 23429064 (-) True tbxtb
XM_043254534.1 mRNA upstream 13434 23429646 ~ 23444063 (-) False si:ch211-130h14.4
XM_043254535.1 mRNA upstream 13434 23429646 ~ 23444063 (-) False si:ch211-130h14.4
XM_043254536.1 mRNA upstream 13434 23429646 ~ 23444063 (-) True si:ch211-130h14.4
TU142010 other downstream 337221 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 509561 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 510306 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 889534 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 854102 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 926649 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 982911 24399123 ~ 24403644 (-) False fgf8a

Expression Profile