RNA id: XM_043255592.1


Basic Information

Item Value
RNA id XM_043255592.1
length 3439
RNA type mRNA
GC content 0.47
exon number 24
gene id ablim1a
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16923937 ~ 16962479 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GtatgtgcgtgcgcgtgtgtgcacGTGGCCGCGTGTGAATGTGAATTATTGATGAGGACGCAGCCTCAGAAGATCCTGCCGGGCCGTCCTGCGAGTGTGTGAGCTCGGAAgggtgtgagtgtgtttatgtcTGTCAGTAGAGATGGGGGAGAAGAGTGCGGTGCACCAGCAAAAGCAGCCTCCTTACGATGGACTGTGCAACTACGCCCAAAAAATTACATCCTGCTTCGGATTGGACGTGGCCCATGCACAGGAAGCTCACCACCAGACGGAGAAGCCTTTGATACGCTGTGCTAAATGTGGGGAGGTGTGCAAGGGAGAGGTGTTACGAGTTCAGGCCAAACACTTCCACATCAAGTGCTTCACGTGCAAAGtGTGTGGATGCGATCTGGCTCAGGGAGGGTTCTTCATGAAGAATGGAGAATATCTGTGCACTCTGGACTACCAGCGCATCCACGGCACCCGCTGTAACATCTGTGGAGAGTTTGTGGAGGGGGAGGTGGTGACCGCGCTCGGCAAGACCTACCACCCGACATGCTTTGTGTGCACAATCTGCAAGAGACCATTTCCCGCTGGAGACAGAGTGACGTTCAATGGCAAGGACTGTCTGTGTCAGTACTGCGCAGAGCCCATGTCTCCGGGACCCACCAAAGATGTTGTTGGACCCAGCAGTTGTGCTGGCTGCGGCAGAGATATTAAGAACGGTCAGGCTCTGTTGGCTTTAGAGAGTCAGTGGCATTTGGGCTGTTTTAAAtgtaaggcctgcgccaaagtATTGACTGGAGAATACATCAGCAAAGACGGCGCCCCCTACTGTGAGCGTGATTATCAGGTGTTGTTTGGAGTGCAGTGTGAAGCATGTCAGCAGTTCATCACCGGGAAAGTCCTGGAGGCTGGGGACAAGCACTACCACCCCAGCTGTGCTCGCTGTAGCAGGTGTAACCAGATGTTTACTGAAGGAGAAGAGATGTACCTGCAAGGATCGACAGTTTGGCATCCAAGCTGTAAACATTCACCCAGAGGCGAGGAGAGACAGCGGCCGACACGTTCGTCGTCCGAGAGTATATGTTCCAGACCTTGTTCAAGCATACCTAGCTCACCGGGTCACACCATATATGCAAAAGTAGACAATGAGATCCTTGATTACAGGGATTTAGCAGCCATTCCCAAGGTCAAAGCCATTTATGACATTGAGCGTCCAGATCTAATCAACTATGAGCCACTTTACACCACCTCACTGGATGAgtcagaggagagagagagtgtgggaGAGCTGCAGAGCTCCAGGAGAGAGTGTTCACCTATGCCAGAAGACAGAACCAGGTCACCAACACCAACAGCTGAGGGTTACTACGAGATGAGAGAACGAATCCTCCATCGGTCGACAAGTCAAGGCTCCATCGGCTCACCCATTTACAGCCGCCACAATTACACTCCCACCCTGTCACGCTCACCACAGCACTTCCACAGACCCGGCACTGAGCCGTCCAGTGGTCGGAGTTCTCCAGGGGCCAGCACCCCTCCTCTCCTTCTGACTCCCAAACATTTTCACCTGCCAGatcAAGGAGTAAACATCTACAGAAAACCACCTATCTACAAACAGCATGATTCAGCTGCCTTTGCAGCCCAGAGCAAGTCTGCTGATGACATCATCAAATCGGCCAAATTCCCCTCAGCGTTCGCCCCCGGTCCAGACTACCCAGCAAAGATAGAGACCGACTGCTGGTCCTTCCCGATCTCCCACGCTGCCCTAGGAACAGACGGGAGGAGAAGGTCGagagaggaggatgaggaggagctCCAGAAGCGCAGACAGATCCAGGAGGAACATCTCAACAAGATCCAGTCTGGTTTGGGGAAAATGATTCTTAAGGaggagatggagaaagagatGATCCGAGAGCGTCATGCACGGAGCCTGTCAGCACAACGCTACGAACACGGAAGCAATCAAAATTCACCATCTAAAACAGGCTCGCTGCCTGGATATGGGCGTAATGGACTGCATCGGCCTCAGTCGACTGATTTCACTCAGTATAACAGTTACGGAGATGTGTGTGGCGGGATGAGAGaGTTTCAGcCCATGCATGATGGCCACCGTACAGCCACCAGAATGGACAGAGGAGTGTCTATGCCTAATATGCTGGAACCAAAAGTTTATCCATATGAAATGCTCATTGTAACAAGCCGCAGTCGCTCCAAACTGCCCAGAGATGTGGACAGAACCAGACTAGAGCGCCACCTGGCTCCAGAGATGTTCTTTGAAATCTTCGGGATGGCAATTCAGGAGTTTGACAGGTTACCTCTGTGGAAACGCAACGAACTGAAGAAGAAAGCCAGACTCTTCTAACAACACTCACATGTATCATACGGCCGTTTACTCCTCTTCTGATATTTCTCGCTAAAATTATAGCCAGAAGGAAGCTCCGTGCTGCAATATGATGTCAGTTTATAAAGAACGGAGGGTTTTAACATTTCATCTCTATCTCCGAATTTTtcaaatcttgtttttttttttttttgtttgttttttttcgctGTCGCTTTAATTTCCTCTCTTCCAGAAACGAGTCTTcctctttttgttctttgttcttCTTGGATGTCTCCGTGAATCATGTTCATGCAGGTCGGATTTTCCAAACCTTTGTAAATGTTGCGGTTATAATCCTTTTTAATTCACTGCTCCTCCGTTTGCGTCACTTTTGGTTCAGGGAGGGATTGTAGATGCTACACTGTGTGGGTGTCTGTGTCTTTGTACCCGTTCATGTAATGCATTCGAAGAGGCTTAATCCATACTAGCACATATCCATGTATTCACCCTTTGCTACTGTACCAGACTCCAGTTAACATCTCTTAATTAAAGGTCAAGTGTATCATTTCTGAACAgacctgaaaaaaataatatcgcTGTCAATCACGTCGCATCATTGGTTACTAGctacttaaaccggccattttTCCATTTGGTGCCACTCACTTTTCAGAAGTGACCCACTTAACCTTTACGCTTTCTGATACTGAATTAACTGTTGAATCGATGCCGATGTCCCtagtatattgtatatttaaattatagaaTACAAATGTAAGGTAAAAATGAactgcatttgatttttttttaaagagcggATACTTACACTGccaatttattgtattataattgtatttctgAATAAAGGGAAATGTCTCGATGTGCAACTTTAAGTAAAAACCAAAGGCATTACAACCCGAACGGGCTCTGCGGGAGCTGTAGTctgaagctgttttttttttttcgtcctcAGATGAATTATAGGGTCGTGTTTCTTCAGACTGCACTGGATTTGCTATGAAGCTCATACAATGAATTATTAGCTGGACCAAATCAATGAATTCAGATGAAACATCATCATTAAACACCATGCTGacagactgaaataaaattttgggAAACGGA

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0008270 zinc ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139762 lncRNA downstream 329206 16593425 ~ 16594731 (-) True G94455
TU139759 lncRNA downstream 354687 16567915 ~ 16569250 (-) True G94453
TU139711 lncRNA downstream 405111 16515857 ~ 16518826 (-) True G94425
TU139701 lncRNA downstream 491507 16430674 ~ 16432430 (-) True G94416
TU139699 lncRNA downstream 493644 16429841 ~ 16430293 (-) True G94414
TU139834 lncRNA upstream 24277 16984506 ~ 17015657 (-) True G94511
TU139837 lncRNA upstream 24277 16984506 ~ 16992084 (-) False G94511
TU139854 lncRNA upstream 61874 17022103 ~ 17030063 (-) True G94516
TU139972 lncRNA upstream 414521 17374750 ~ 17376237 (-) False LOC122356193
XR_006252401.1 lncRNA upstream 672020 17632249 ~ 17672523 (-) True LOC122356952
XM_043255702.1 mRNA downstream 91697 16827009 ~ 16832240 (-) True LOC122356703
XM_043255703.1 mRNA downstream 118796 16795555 ~ 16805141 (-) True vsir
XM_043255704.1 mRNA downstream 138309 16779594 ~ 16785628 (-) True LOC122356705
XM_043255701.1 mRNA downstream 307431 16607735 ~ 16616506 (-) True capn2a
XM_043256178.1 mRNA downstream 317015 16594967 ~ 16606922 (-) True capn1a
XM_043255788.1 mRNA upstream 4066 16964295 ~ 16975489 (-) True fhip2a
XM_043255906.1 mRNA upstream 252704 17212933 ~ 17365849 (-) True LOC122356833
XM_043254697.1 mRNA upstream 415764 17375993 ~ 17387006 (-) False LOC122356193
XM_043254696.1 mRNA upstream 416489 17376718 ~ 17387004 (-) True LOC122356193
XM_043254725.1 mRNA upstream 587185 17547414 ~ 17548604 (-) True LOC122356215
unassigned_transcript_1928 other downstream 476175 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 497402 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 631571 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 761184 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 758878 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 759405 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1585352 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1585352 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1585352 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile