RNA id: XM_043255629.1


Basic Information

Item Value
RNA id XM_043255629.1
length 2084
RNA type mRNA
GC content 0.48
exon number 10
gene id khdrbs1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17769381 ~ 17773851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCGACGTCATTTCCACCTGCGCCATTACCCGCCGTTCCCTTTGTTAGGACGGTAGAAAAGCGTCGGCCACGCATCTCCCGCACACGCCGTTTGAATTCTCCGCAGAAGCCCCGCAAAACCGCGAGCGACATGGACgccaacaacagcaacaacaagcGCAAGAACAGCGTCGGGGACAGTAAATATCTCCCGGAGTTACTGGCGGAAAAAGACAGCCTGGACTCCTCATTCACGCACGCCATGAAGCTCCTGTCTGCAGaGATCGAAAGGGTTCAGAAAGGCGAGCCTAAAAAGGAGTCCGAGACGTATTTGGACCTGTTCACCACCAAGAACGTGAGGGTGAAAGAGAGGGTGCTCATTCCTGTAAAGCAATACCCTCGGTTCAATTTTGTGGGGAAGATCCTGGGGCCGCAGGGCAGCACCATCAAACGTCTGCAGGAGGACACCGGCGCAAAGATCTCGGTGCTGGGCAAAGGATCCATGAGAGATAAGAACAAGGAAGAGGAACTGAGGAAGGGTGGAGATCCGAAGTACGCGCACTTGGCCATGGAGCTTCACGTGCACATCGAGGTTTTTGCTCCGATTCCCGACTGTTATCTGCGTATGGCTCACGCCATGGACGAGGTCAAGAAGTTCCTAATGCCTGTGGAAGGGCTTGAGGAGATGCACCCGGAGGCGTTCATGGATCCAGGGTTTCTGAACGGCTCTCAGGATATCCATGGTCCCGGCAGAGGTCTCCCTCCTGGACGGGGCCGCGGCGGTCCACCACCCCCGATGGGACCTAGGGGTCGTGGCATGCCGCCTCGTGGAGGACCGCGTGGAGGAGCGCCGAGAGGAGGACCGGGCCGTGGAGCTGCTGCGAGGGGGGGGCCTGCGGGAAGAGGTGGTCCTCCACCCCAAACGGCAGCCAGAGGAGGCGCCGCCGCTCGCTCAAGACCGCCGACCCAGACTCAGAGGATGACACCGGCAGCCGCTCTCTCCCACCCACAGCACCCAGCAAAACCTGAAGCATACGGCGAATATGCATATGAAGAGCCATATGAGGAGCCTTCCTACGAAGGCTATGAGGGCTATTACAGTCAGCCTGCTCCACAGCCAGACACAGAGTATTATGATTATGGTCATGGAGAGGCCCAGGAAACTTACGAGTCTTACACTGAAGATGACTGGGAGGGTGGAGCTTGGGGCGGCGCCGGTGGAAAGGCTCCACCTGGTCGACAGGGCAAAGCCTATCGGGAACATCCATACAGATACTGAGAGCTGTCCGTCACTACGGTTGCCTGGCAACTACCTCCCCTCGTAACCTCTTGTAACCACCTAAAGTAATTctagttgttatttttgtattctgtttTGGTTAAGACtcctttttaatattctaaatcTACTCTTTAAGTAGTACGATGACCATAAGTTGGACGTGACGCATTTTTAGATTTGCAATTtaaatgctgtgttttgttttttcttttgtcgttttgctgcttttgttcatttgttttaatgcataagTGTTTtttctctggaaaaaaaagttgataCCTGAATGCTAGATAATTAGCCGATGGCCATGTGTAAAATgacttgctaaaaaaaaaaaaaaaaaaaacgacaaaaagacaaatgctTGTTAATGTCACTTAGACTTATTCCAAACGCGCTTTTGTAAGGCATAGCAAAAACTCTCCCGaggaatgcacaaaaaaaatattagttccTGTACAAACTCAAcatgttacttttatttttcaaagaacaGATTTGGTCTGAGGCTGTTTATTGTATGTCtcgtaaaaacaaaacaaaaaaatcaaacttCGCATCTGTTGATTTTCGAATTTTGTTAAATGAGCGAAACGAATCTCAATGTAGTTTACCTTTAGTCTGACAAAAGTACAAATCTCAAATCTTTGTACGTGCAATACTCAAATATTAGAGACTtgttttttggtgttttataGATTTGcagttttcaaaacattagcaaAGTTGTGCATTTCTTAACTAGGGAACTAAATATGTCCAAAATGTGTCCCTATCGGTTTGTCAATAAAGCATAGTTTTCTTTTACAGCCTTCAAAA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139990 lncRNA downstream 47081 17721728 ~ 17722300 (-) True G94608
XR_006252401.1 lncRNA downstream 96858 17632249 ~ 17672523 (-) True LOC122356952
TU139972 lncRNA downstream 393144 17374750 ~ 17376237 (-) False LOC122356193
TU139854 lncRNA downstream 739318 17022103 ~ 17030063 (-) True G94516
TU139837 lncRNA downstream 777297 16984506 ~ 16992084 (-) False G94511
TU140004 lncRNA upstream 17033 17790884 ~ 17791890 (-) True G94619
XR_006252405.1 lncRNA upstream 118186 17892037 ~ 17900115 (-) True LOC122356989
XR_006252304.1 lncRNA upstream 129346 17903197 ~ 17910716 (-) False LOC122356279
XR_006252303.1 lncRNA upstream 132001 17905852 ~ 17910716 (-) True LOC122356279
TU140056 lncRNA upstream 166552 17940403 ~ 17994249 (-) True G94663
XM_043255024.1 mRNA downstream 4121 17752801 ~ 17765260 (-) True LOC122356377
XM_043256329.1 mRNA downstream 32421 17733938 ~ 17736960 (-) True glo1
XM_043256393.1 mRNA downstream 38394 17722431 ~ 17730987 (-) True btbd9
XM_043256024.1 mRNA downstream 55814 17698937 ~ 17713567 (-) True zfand3
XM_043256023.1 mRNA downstream 55815 17698937 ~ 17713566 (-) False zfand3
XM_043255644.1 mRNA upstream 2868 17776719 ~ 17788131 (-) True chp1
XM_043255705.1 mRNA upstream 27133 17800984 ~ 17853373 (-) False runx3
XM_043255706.1 mRNA upstream 27133 17800984 ~ 17853186 (-) True runx3
XM_043255014.1 mRNA upstream 186186 17960037 ~ 17964870 (-) False rsrp1
XM_043255015.1 mRNA upstream 187108 17960959 ~ 17964870 (-) True rsrp1
unassigned_transcript_1930 other downstream 49675 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 50202 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1928 other downstream 1321619 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 1342846 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 1477015 16290154 ~ 16292366 (-) False cisd1
TU140311 other upstream 771730 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 771730 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 771730 18545581 ~ 18672893 (-) False LOC122356088
XR_006252356.1 other upstream 2094162 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 2369745 20143596 ~ 20143727 (-) True LOC122357145

Expression Profile