RNA id: XM_043255696.1


Basic Information

Item Value
RNA id XM_043255696.1
length 5084
RNA type mRNA
GC content 0.52
exon number 17
gene id mypn
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20572320 ~ 20595989 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAAATAACACGGCGTCGAAGGTCTGTGCTTCACGGGCGGCCGCTCGCTGCCCTGAACTCCAAGGTTAACTCCAGACCAGGAAGAAGCTCTTGCAGCTGCGCTCGGGGGCCGGCTCCGGAAAGCTGGAATTAGGTGCTTCTGAGCAGCTGCAGTAGATCTGGACGTCGTGGACGTTCACACGAAGTCGAAGCATGCAGGAGAACAGCCCGGATCAGCCCACGTCTTTATCGCAGCTCCTGCGTGAGAGTTACCTGGCCGAGGCCCGAGCTCATCACCGGCACGGAGAGCCCAGCTGCATAGACGCTCCTCGCCGGCTGGTCTACGGCACGCTGAAGGAGAAAGCAGACGACTCCGGCGGGAAAGCGGACCCGCAGTTTCCAGACCTGTCTGCTTTCCTGAGCCAGGAGGAGCTGGACAAGAGCGTGGACCTGGCCTGCAAAGCCATCAGCAGCGACGCTCCCGAGCGCGAGGAGAGATCCCGCACGCATCCGCCGCCGAGCCGCCGCGACAGTGCACCTCCGGAAACGGACGCCGCTTCGGAAAGGCCGACGGTCCGGGCCCCCGTCCGAGACGACGCGATCAGGAGCGCCGCGCCCGATTTCAAGCGGCCCCCGAGAAGCGCTCCGTACGGCCTGGAGACCCAGTCCAAGAAAGAGTTCCTCAACAAAGCGGCCGATTTCATCGAAGAGCTTTCGTCTCTGTTCAAAGCCAACAGCTCCAAGCGGGTCCGGCCCCGCGCTTGCAAGGGCCACCGGAGCCGCTGCCAGAACAAAACCGCGGCCGACGGAGCCTCGTACTCCATGGACGCAGAGGATCGCGAGAGACCTATGGTGCTCGTCCAGCAGACGGAGGAGCCGGCGGGGAACAGCGGAGTCACCGAGGGCCCGCCGGAGACGGAGCCGGGGCCGGCGTGCGAGGAACCTCCTTCGGAGGAGGAACCCGTGTGGGAACCTCCGCGCTTCGTACAGAAACTCAAAAGCAGGGAGGTTCCCGAGGGCAGTAAGGTCCAGCTGGATTGTATCGTCAGAGGACTCCCTGCTCCTGAAGTCCGgtggTTTTGTGAGGGTAAAGAGCTGGAAAACAGTCCCGATATTCAGATCATCGCTAACGGTGAGCGACACACTCTGATCATAGCAGAGGCGTTTGAAGAAGACACGGGCAGATACTCGTGTTTTGCCTCTAACTTTTATGGAACAGACTCCACCTCAGCAGAAATCTACATTGAGGGAGCGTCTTCGTCAGATTCTGacgaagaaaaacattttcaagcaGAACTTCATAAAAGTTCTCCTGAGCCCAAACCTGCTGTGGTCTTGGCAGAACCCAACACATCTGCTGAAGACACCACACCAACTATAACATCCACCTTCGACGAACCACCAGCACCTTCTGACTCACTGCCACTGACTGAGCCGATTACTGACCCAACCTCTAAGCAAGAAGATACAGAACTTCTGAGTTCCACGGTTGTCAGCTCTGAAATACCTGTACCAGAACCAACCATATCTTTAGCAGAACCAACCGTACCTGTACTAGAACCACCAACGCCAATATCTGAGGTGGAGCCCATTCTATCTATTCCTCCACTGACCATTGCCccaccatcaccaccatcacCTCCATCCAGCCAAAGTATCTCCGATGTACTGTTAACATCTCAGCCGAGCATTTCTGagaatCTAAATGGCAGCAGTAGTTATCTTCAAAGCTTCGATGTAAGGCCCATAATGGCAGCTCCAGTTTTTACGAAGAACCTCCAGGATGTCCTGGCTGTGGAGAGTCAGTTAGTGGTTCTGGAGTGCCGAGTAAAAGGCACTCCCTCCCCTAAAGTGGACTGGTACCGGGAGGGCACACTTATTGAAGATTCCCCAGACTTCAGAATCCTTCAGAAGAAACCAAGATCTATGGCTGAATCTGAGGAGATTTGTACTTTGGTTATTGAGGAGGTCTTTCCAGAAGATTCTGGAACATTTACTTGCATAGCCAGCAATAAATATGGCACAGTTTCCAGTACTGCTGCATTGAGAGTAAAagGACACAATAATAACAGCACCAACCCTAAAACAACAAGCACTTTAACAGTGGAATCCTCTCTACAAAAGGTTCTGGAAACCAAACTGATGTCAACAACTTTAAACCGTAAACCAGATGTTCCTCTGGTAAACACCAAGCTTCATTCAAGTATGATTTGCCTTGACCCTTTGAGCTCTGGATTTAGGCATTCAGACTTTCAGGACTCTGGATCGCTTCGCTCAGACTCCCTAACTCCTAGTACGCTTCGCCATGATCTCACCGCTAGCCTACCTAGTCTAAACCCTCTCAGCATTGGAAAATACAGCTCAGATACTTTCAGGACTAGTTTACCTCAGCTAGACCCACTCAGCTTCGGTTCATCTTCACTGAACTCAGACACAAACCATAAGTCTCTCAGCTCTATCACAACACACTTTGATTCAGGAGGGTCTGGTTTTAAGCCTTCCACAGAAGTGACCCAAAGTCCACCAAATGGGTCAGCCTCCAGTATCACTATGAGCTCTGATGCCTGGGTTGAACCATTAGCAAATTGTTCAAAACCAACCCCCAGCCCTTCTGTTACTAGTGTCCCACCAGTTAACTCCAGTAACCCTCAAGAGCGACCAACTGTTAAACCCCTACCAGATCCCCCAACATCTTGCCTCAAGACAAGACCCGAGGGTGTGTTAGGGAATCACAACGAATCTCGCTCTAGTGCCCGAGCTGGCCTCCGTGTAACCTTTAAACTCCCAGAGGATGAAGacgaggaagaaaaagaaatggcaTCTAAAGAACCACCACCTGTGTTTGCTAAACCAAAATTAGATCCAGTGCAACTCCAGATCCTCCACAATCAGGTGCTTCTGGAACAGGGGCAGGAAAATGTCTCCCCAAACCAAGATTCTCCACATTTAGACAGGACAAGTTGTGAACCACCCCCTGTCAAGCCACCAAACCCTCCTGCAAATCCAATTCCATCCCAACTCCAACCACCTCCTCTTATAATGAACTCTGCACCAATTCTACTGCCAATCCCTGCACCTGTCCCGCTACCTCCTACAGCACCTGCTCCCATTTTAAAAGCTGTACCTGTATCCCAATTGAGCATGCCTTTAAACAATTCCATGCCAATGCCCCAGCTTACTCCATCAGCCACAACATTACACAACCACCCTCCAATACCTCAACAAAATCTGGTTCCTACTACTTTAAGTACTGTTCCACCAGGTATGGTTCCCTCTAACCTACTAACCCAAATGAATATGGTGCCCACTCCTCCACAGCTGAATTTGGGGCCAATCTCAACCAGTGTGGCTCCAGTTGCCCCTATGACAAGTGTAATCCCAACAATCCCAATAGTTCAATCCGGAGGTGTTTCTAACATCCCTATGCCTCCAAATTTGGCACCTTCTATGCATTTTCCCCAACTTATCATGGCTCCAACCACCCAACCTAACCCCAACCATGTGCCCAATATTCCACCCATCACTCCTACCCCTCATATTTCACAAATTACCATGAATCCAACCTTGCAGATGAACTCTGTTCCCATTAGTGACTTGAGTGTTGCCAGAACACAGGCACTGATGTCACTTAATGCATCAGCAGTGAACAACACTGTGCCAAAGTTAAACACCACCACAAATTCTCACCCCAGCATGGCTCCACAAGACACAAATTCCCAAGGTGTATCTTATCCACACCTGAGTAAAATCACTTCACCACATCCAGTGAGAAATCAGCCTGCATCGATCCTGAGTCCAATGTCTCCACCTCCGTTGAATGACACCCAGCCTCCACTTCCTGGGATTATTCCGATCTCCACCCAGAGCTTCACCTACACAAGGCCGAAGGAGTTCATCGCGGCCCAGGCGCTCTCTCCTATAAGGAGTCCTTCCCCAACCGAGTCTCCTGTTCCAATGCTCCATGAATTAGCTGCACAGATATTCCCGAAGTCAACACGGGAGCTCATGTCGCCTGTCAACCAGTTAACTCCGTCCCCAAGAAAGTTCCCAACAAGAGTTCTGGAGTGTCCAAGCAGCCCACCATATGTGTCCTCACCACCTCTTCTGCCTCCTGGGCTGGTGaattcagtgttttcttttagaaCTCAGTCACCCCCACAAGCTTCTTCACCAACGTCTAGCAGCTCCACTCCTAGCCCCATCCAAAATCCAGTGGCCTTCCTTAGTTCAGTCCTTCCTTCACTTCCAACATCTCCTCCGACCAATGCCATGGGACTGCCTAAGAGGGCCCCACCTGGGCCTCAAGCTGCGTTAAAGAAGAATCAAAGAGGCTCCAGAGTCATGTCCGATGACGATATCCGCGAGAGCAAGGAGTCACTCTTACAAGATATTGAGAAGAAACTGCGTTTTAAAGATGAACAGCTTCGTTATGGACAGCAGAAGCAGAGTTATGGGGGGGAAGTGAGCCCACCGCTCGGACCAAACATTCCCACCGCAACTGTCATTAACTATGACGAGGAATACAAGGTGTCGAGCTTTGAGCAGAGGCTGCTGGGTGAGATCGAGTTTCGTTTGGAAAGAACTCCGGTTGAAGAGTCAGACGATGAAGTCCAGCACGATGAAATTCCCACCGGAAAATGCATCGCTCCCATCTTCGACAAGAAGCTGAAGCACTTCCGGGCTGTGGAGGGGATCCCGGTCACGTTCACCTGTAAACTTGTTGGGATTCCAGTTCCTAAAGTTTACTGGTTTAAGGACGGAAAGCAGATTCTGAAGAAAAACGAGCACTATAAGAAGATCAGAGAGGGTGATGGGACGTGTTCGTTACACATAGAAGCCGTCACAAGTGACGATGACGGCAACTACACAGTCATGGCAGCCAATCCACAGGGAAGAATGAGCTGCTCGGGTCATCTGATCGTCCAAACGGGGCCCGTGCGAAACCGTCCCACCGTCCACTCGCAGAGGTGAGCGGTTTGCCTCATCCTGAGATCATGTGGCTCCTCAACGGACGGCCCATATACCCAGACCTCACTCACCGGATGCTCGTGAGGGAAAACGGGATCCATTCTCTGGTGATTGATCCTCTGACTCAAGCCGACGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141256 lncRNA downstream 55485 20518600 ~ 20520093 (-) True G95524
TU141247 lncRNA downstream 60267 20514773 ~ 20515311 (-) True G95519
TU141232 lncRNA downstream 300322 20264726 ~ 20275256 (-) False LOC122356211
TU141230 lncRNA downstream 337351 20236678 ~ 20238227 (-) True G95506
TU141210 lncRNA downstream 434892 20114726 ~ 20140686 (-) False LOC122356209
TU141285 lncRNA upstream 24058 20620047 ~ 20620719 (-) True G95537
TU141279 lncRNA upstream 25273 20621262 ~ 20623143 (-) True G95535
TU141282 lncRNA upstream 25273 20621262 ~ 20678269 (-) False G95535
TU141283 lncRNA upstream 25273 20621262 ~ 20623230 (-) False G95535
TU141307 lncRNA upstream 232789 20828778 ~ 20829053 (-) True G95549
XM_043256110.1 mRNA downstream 28586 20542775 ~ 20546992 (-) True LOC122356970
XM_043254780.1 mRNA downstream 32943 20521647 ~ 20542635 (-) True eif2ak2
XM_043256235.1 mRNA downstream 72930 20347147 ~ 20502648 (-) True nid1a
XM_043254721.1 mRNA downstream 229896 20275777 ~ 20345682 (-) True lyst
XM_043254720.1 mRNA downstream 300889 20264785 ~ 20274689 (-) False LOC122356211
XM_043256163.1 mRNA upstream 2735 20598724 ~ 20606506 (-) True cacul1
XM_043255900.1 mRNA upstream 11268 20607257 ~ 20616412 (-) True sirt1
XM_043255380.1 mRNA upstream 28988 20624977 ~ 20645338 (-) False herc4
XM_043255377.1 mRNA upstream 28988 20624977 ~ 20645337 (-) False herc4
XM_043255378.1 mRNA upstream 28988 20624977 ~ 20645334 (-) True herc4
TU141260 other downstream 4016 20570038 ~ 20571562 (-) True G95526
TU141237 other downstream 78714 20493642 ~ 20496864 (-) True G95511
TU141235 other downstream 83502 20488785 ~ 20492076 (-) True G95510
TU141250 other downstream 88874 20479925 ~ 20486704 (-) True G95520
TU141433 other upstream 411483 21007472 ~ 21180217 (-) True G95646
unassigned_transcript_1931 other upstream 817811 21413800 ~ 21413871 (-) True trnag-gcc_70
unassigned_transcript_1932 other upstream 978262 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1933 other upstream 1057623 21653612 ~ 21653681 (-) True trnag-gcc_72
TU141816 other upstream 1542340 22138329 ~ 22143970 (-) False LOC122357128

Expression Profile