RNA id: XM_043255701.1


Basic Information

Item Value
RNA id XM_043255701.1
length 2994
RNA type mRNA
GC content 0.47
exon number 21
gene id capn2a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16607735 ~ 16616506 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCTTCCTGTGCACGGGTTGAAAAAGACGTTCTGCTTCTTTTCCGCTGTGCTTCTGCTGCATTCCGCTTTCAAAGGCAAAAAGAGCGTAGAACGCGTTCCGTGCGTGTGTGAACGGCCCCAAAATTACAGGCTTAGGACCACGCCTGTCCTGGAAGGAGGAGTGGGTCGGGGCGTAAGCGTAGAACTTTTTCACTGTCGCACTTTTCAACAGCTGCAAAGGAGCGCGGGGCgaaaaacaaaagtttgaaAATGTCCGGCGTGGCATCCACACTCGCCAAGAAGAGGGCCGAGGCCGCTGGCTTTGGAACGAACGCCAATGCGGTGAAGTACCTGAACCAGAACTTCGAGGGTCTGAGGAGCGAGTGTCTGAGCCGCGGCCAGCTGTTCTGCGACCCTACCTTCCCGGCCGTTCCCGAGTCTCTGGGCTTCAACGAGCTCGGGCCACGATCGGCGAAAACCACAGGCGTTGTGTGGAAAAGACCTGGGGAGTTGACCTCCAGTCCCGAGTTTATTGTTGGAGGGGCAACAAGAACAGATATTTGCCAAGGAGGTTTAGGTGATTGCTGGCTCCTAGCAGCCATCGCTTCCCTAACCCTCAATGAAGACGTTTTGGCTCGCGTCGTTCCGTCCAACCAGGGCTTTGGGCAAGACTATGCTGGAATTTTCCACTTTCAGTTGTGGCAGTTTGGGGAATGGGTGGATGTGGTGGTGGATGATCGATTGCCCACTCGAGATGGAGAACTGCTGTTTGTTCATTCAGCCACAGGCTCAGAGTTCTGGAGCGCACTGCTGGAGAAGGCCTATGCTAAAGTGAATGGGTGTTATGAAGCTCTGTCTGGAGGTTCCACCACAGAAGGCTTTGAGGATTTCACCGGTGGAATTGCAGAAATATACGAATTGAAACAAGCTCCTTCCAACATGTTCCAAATCATCAGGAAGGCCCTGGATTCTGGATCACTTTTGGGATGCTCCATCGATATCACCAGTCAAGCAGACTCAGAGGCCATCACGTATCAGAAGCTTGTGAAAGGACATGCCTACTCTCTTACTGGAGCAATCGAGGTTAATTACAGAGGCCGGAAAGAGAAGCTGGTCAGAGTCCGTAATCCTTGGGGCCAGGTAGAATGGACAGGGGCCTGGAGTGACAACTCTTCTGAATGGAATGCCGTCGATCCGTCCGAACGCGAGAATGTGAAGTCAGAAGATGGAGAGTTCTGGATGTCATTCTCAGAGTTTGCGAGGCAGTATTCCCGCATAGAGATCTGCACTCTGACCCCAGACACGCTGACATCTGACTCCGTCAAACATTGGAGCGCGTGTAAGTTCGATGGCACCTGGAGACGAGGCTCCACGGCTGGTGGATGCAGGAACCATCCATACACCTTCTGGATGAATCCTCAGTTTAAAATCAAACTGgaagaggaagatgatgatCCTGATGATAATGAAGTGGGCTGCAGTGTGGTGATTGGCTTGATTCAGAAGAACCGGCGTAAGTTGAGGAAGTCTGGAGAGGACATGCACACTATTGGCTACGCCATCTATGAGGTGCCTTCTCAGTTCCACGGGCAAAAGGATGTTCATCTGGATAAGAATTATTTCCTCACCCACGCACAAAAAGCTCGATCTGAGACTTTTATCAACCTTAGAGAAGTCAGCACCCGCTTCAAACTTCCTCCTGGAGAATATCTCATCGTCCCTTCCACATTCGAACCGCACAAGAACGGAGACTTCTGTGTGCGCGTGTTCTCCGAGAAACAGTCTGAGATGCAAAAATGTGATGACCCTATAGAGGCAAACATAGAAGATGAGACGGTGTCTGAAGATGAGGTTGATGCTGGTTTTAGGGGACTGTTCACTAAACTAGCAGGAGATGACATGGAGATCTCTGCCACGGAGCTGAGAACAATTTTCAACAAAATAGTTGCAAAAAGAACAGATATTAAAACAGATGGTTTCAGTTTGGATACATGTAGGGTCATGGTGAACCTCATGGATGAAAGTGGCAATGGTAAACTAGGGTTAGCTGAGTTTGCCACTCTTTGGAAGAAAATTCAAAAGTATCTGGTCATTTATAAGAAGAATGACATGGATGGGTCCGGCTGTATGAGTACACCAGAGATGCGAATGGCTTTAAAGGAAACAGGATTCTCTCTGAATGACTCCATTCATCAGTGTCTGGCGGCACGCTATGGAGACGCAGACATGAAGATCGACTTTGATAACTTCGTGTCGTGTGTGATGCGCCTGGAGATGATGTTCAAAGTCTTCAAAAGGCTTGACGTAGACAGCAGTGGGTTCATTGAGCTGGACTTCTTCCAGtggCTGACGTTTGCTATGGTTTAAAGGCCCAGAGGATTATTATgaatagtatttttgttttgctagtTAACTTACACCAGCGATTCTCAGTCCTAGTCCTTGCGCCCCAccgctctgcacattttgtatgtttctctTGTTTGTTCCATTCGAAACACATGCCATGCGAAGTGGAAATCACTGGATATGCTCTGTGCTTTAACAAAGAGACACACAAAATATGCGCGAGGTCTGGAATCGAGAACCGCTGACTTACACAGAAGACCACCATATAGCGAAATGCTTAACGAGTATAGCGGACCTCCTGGGATTTGTAAATGTGTCCGTTGTACTTTGCAGTAGATATACAAGCATAGTTGCCTGTTGTTTTATTCGCAATGCACTTTCCTCTTACTGCAGTGCTTGCAAGGcatcattgttttgtttttttgttgctgctCCAAACTGTGTGGCTTGTTGATGACAATTGTGCAGTTACTTTAAGTGATCAGACATACGACTCACACCTGGTCATATAGATTTAAAGAGCAATCAAAGATATATAGCCACCTTTTTATTCCTGTAAGTCAACACTTTTGGCCAGTAAGCAGCCACATAGCAATGCTCTGGCAATAGCATcttgtgtctatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139762 lncRNA downstream 13004 16593425 ~ 16594731 (-) True G94455
TU139759 lncRNA downstream 38485 16567915 ~ 16569250 (-) True G94453
TU139711 lncRNA downstream 88909 16515857 ~ 16518826 (-) True G94425
TU139701 lncRNA downstream 175305 16430674 ~ 16432430 (-) True G94416
TU139699 lncRNA downstream 177442 16429841 ~ 16430293 (-) True G94414
TU139834 lncRNA upstream 368000 16984506 ~ 17015657 (-) True G94511
TU139837 lncRNA upstream 368000 16984506 ~ 16992084 (-) False G94511
TU139854 lncRNA upstream 405597 17022103 ~ 17030063 (-) True G94516
TU139972 lncRNA upstream 758244 17374750 ~ 17376237 (-) False LOC122356193
XR_006252401.1 lncRNA upstream 1015743 17632249 ~ 17672523 (-) True LOC122356952
XM_043256178.1 mRNA downstream 813 16594967 ~ 16606922 (-) True capn1a
XM_043256167.1 mRNA downstream 15663 16571548 ~ 16592072 (-) False lrrfip2
XM_043255704.1 mRNA upstream 163088 16779594 ~ 16785628 (-) True LOC122356705
XM_043255703.1 mRNA upstream 179049 16795555 ~ 16805141 (-) True vsir
XM_043255702.1 mRNA upstream 210503 16827009 ~ 16832240 (-) True LOC122356703
XM_043255598.1 mRNA upstream 307431 16923937 ~ 16962479 (-) False ablim1a
XM_043255597.1 mRNA upstream 307431 16923937 ~ 16960229 (-) False ablim1a
unassigned_transcript_1928 other downstream 159973 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 181200 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 315369 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 444982 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 1102601 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 1103128 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1929075 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1929075 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1929075 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile