RNA id: XM_043255703.1


Basic Information

Item Value
RNA id XM_043255703.1
length 2288
RNA type mRNA
GC content 0.45
exon number 7
gene id vsir
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16795555 ~ 16805141 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCACTGCTTTACTTCTGATATGAATCTGGGAAGTTACGTGCAGTAACAGCACTTGAGTTCACAAAACACGGGAATAAGAGGAGGACTGCACAAGATCTTCTGTCACCACAACTGTGGAGAAGGACCTTGGGAATAAGCCGAGTACATTTCTACAGTTTCGTGAACGTCTGCAGGAGATCAGGACTGATGGATGCATTTTGCGCTCTGTTGCTCTGCTTCCATCTCTTAACCGCGTTTCAAGTGAGCGGCGAGCGTCACTCTTTCAGTGTCTCTGTGCCACATCGGGTCTACGAGTGTCCTGAAGGGGCCAATGTCACGATGATGTGTCTTCAGTCTGGAGACAAGGTTCATTCGGGGGACAAGATGTGGAACACCTGGCTCTTCACACCTCGCTCGCAGGAGCACTGCCACAAGGGCGTGCATCCTCGCGGGTCCGGTCACTCCAACAACGCGCTGGGAGTGGAATACACGGGCAAAGGCAGCAAGTCTTTCTCCATCTTTTTGCAGAACATCAGCTACAGGGACCAGGGCAAATACTGCTGTCTGCTTCTGGAAGTTAACAAGCAAAAGGTGGAGCAGGAGGCCCGGGAATTCATCTACCTGAATGTAGTGCCATCGATGGGACATGCTCACAACAGCAGTCTGAAGTGTTCGGACTGGTCTCACGGCCCTTCAGATGactCGGTGGCTGAAGGTCTGGCTATCGCTGCCTGTGTCGCTTTCATTCTGTGCCTCCCGCTCATACTGATGCTGGTTtacagacagagacaaacagTAGAGCGACACAGAcGTGCACACGAGCTGGTGCGTATGGACAGTGAAGCACAGGCTCATGAGAACCCAGTGTTCTTGGGAGATTCTCCACAGCCTAAAGTCCGGACTGTATCCCAAATAATGAGGCAGTCCTCTGAAACAGGACGGCACCTCCTCTCGGATCCCGGAACTCCGTTCTCTCCAATCATACAAGGAGAACTGTTCTTCCCAGCACAGGgaactATCCCTGAATCTCCCAACTTAATGGACTAAAACGTGTCACGCTCTCCCCAGGAGCATCGAGTGCTTCTTCCATCTCCTCCACATCATCATGTCTCTTCCTGTCCTCTGCAAAGATGATGAGGACGGACCCACCCCAAAAAACGAGAACTGAACTCTCCGCTATCACGGTGGGACCCCTTATCTGGTTGGCgtctgtgtctgtctgctgACTTAAATGGGTTTCCCGAGAAGGAAAATCGGAACGTTTCACAAGTTAGGGTATCAGGGAGAACACGATTTCATGAAGAGGAGCCAAAGATTTTCTTTCGTGGCCTTTGAGTTGAACATTTTTCAGCTAAGCAGTTTGCACACATTCCTGTTCACCACGTGCTTCGTGTCAGTCATACTGTGGTTTCATTTGCACTTAAAAGACCGTTTTACTCTCTTTCATTTTTCTATCCCCATCCTCACCTCCGTTCCCAATGAAACGGTCACTTCATCCGCTTACTTCTAGGGATGTATTAATACCTCATTTTTCACTCCTCTTTTACCCATCTCTATACTGATTTTCCTTCACACTCAATAAGGATGTTTGTGCCAAAGTACTCAGTTGTCACTTTATCACTGAAATGGTGCCAGTGCTGGTCCCAAATGAGGTTCTCGGCTGGAATATCTgcaattttgctttaaaatgctaaatagttGATAATACAGTGTCTTTATGTAACAGGCCCAGATTGAGGCCAGCACCGGTACGTTTGAGTGGAAAAGGGATGTTCTCAGTACACTCACCGTCAGACCTGCTGAGAAACAATGGGCTATTAAAAACCCTTGTGTGGTTAGTGTGGTGCTTTTATGATGTATGTAGCTTAAAAATGAGTTCTGCCAGAATGAATGCAGAATTTTTTGTGGTAAATGTCTTACGTGTCCCATGTCACTTGCGGCTTTAAGGGGCCAGAGGGCTCATAAAACAagattttctatatattttgtattgactttttaattgtgtgtgtttctattattcaaaatacaaaaaagcaaaaagcttTTAATCCACTGCCATAAAGAGCCACTTCAATCCACTGCCAAAACTTTGCTTTGTGTATGAATGGATAGTTTATAGGTGAATGACTGGAAATATTGGAATTATGTTGATAATTATGAACctgtttgtacatttaaaagttgCTCGTGTGCCTGTACAAAGTCAATACCGTATATGTAGCTCTAGTGGCAACGCTGTGACAAAATCAATTGCttatattttgtttcataaaaatacaaataaataaaaaaagttctgTTGAGA

Function

GO: NA

KEGG:

id description
K23268 VSIR, VISTA; V-type immunoglobulin domain-containing suppressor of T-cell activation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139762 lncRNA downstream 200824 16593425 ~ 16594731 (-) True G94455
TU139759 lncRNA downstream 226305 16567915 ~ 16569250 (-) True G94453
TU139711 lncRNA downstream 276729 16515857 ~ 16518826 (-) True G94425
TU139701 lncRNA downstream 363125 16430674 ~ 16432430 (-) True G94416
TU139699 lncRNA downstream 365262 16429841 ~ 16430293 (-) True G94414
TU139834 lncRNA upstream 179365 16984506 ~ 17015657 (-) True G94511
TU139837 lncRNA upstream 179365 16984506 ~ 16992084 (-) False G94511
TU139854 lncRNA upstream 216962 17022103 ~ 17030063 (-) True G94516
TU139972 lncRNA upstream 569609 17374750 ~ 17376237 (-) False LOC122356193
XR_006252401.1 lncRNA upstream 827108 17632249 ~ 17672523 (-) True LOC122356952
XM_043255704.1 mRNA downstream 9927 16779594 ~ 16785628 (-) True LOC122356705
XM_043255701.1 mRNA downstream 179049 16607735 ~ 16616506 (-) True capn2a
XM_043256178.1 mRNA downstream 188633 16594967 ~ 16606922 (-) True capn1a
XM_043256172.1 mRNA downstream 203488 16571548 ~ 16592067 (-) False lrrfip2
XM_043255702.1 mRNA upstream 21868 16827009 ~ 16832240 (-) True LOC122356703
XM_043255598.1 mRNA upstream 118796 16923937 ~ 16962479 (-) False ablim1a
XM_043255597.1 mRNA upstream 118796 16923937 ~ 16960229 (-) False ablim1a
XM_043255592.1 mRNA upstream 118796 16923937 ~ 16960229 (-) False ablim1a
XM_043255599.1 mRNA upstream 118796 16923937 ~ 16959938 (-) False ablim1a
unassigned_transcript_1928 other downstream 347793 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 369020 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 503189 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 632802 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 913966 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 914493 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1740440 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1740440 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1740440 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile