RNA id: XM_043255705.1


Basic Information

Item Value
RNA id XM_043255705.1
length 4507
RNA type mRNA
GC content 0.45
exon number 8
gene id runx3
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17800984 ~ 17853373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGACATGCGACTGACAGGTTGTTACCACGGAGATCACCAATGCGAGAGAGGCAGACACCTGAACTTTCAACTACCTAACTAAAACCACGTCGAGAGTACAACCACCACTactagagagacagacagacaaccgTCATAGGCTGAAGTCGGTGAGGCGACGGAGAGGCCAGCTCTTTTCCCTCCCGAGCGGGACACATGGCTTCAAACAGCATCTTCGACACATTCTCCAGCTACTCGCCCAGTTTACTGCGAGACCCGAGCACGAGCAGACGGTTCACGCCGCCCTCCGCTTCGTTCCCGTGCGCTAAAGTGCCCGAAAGCCCGAGTATGACCGCACCGGGGCCGCTGCGGCCCGGCCGGCCGCTGGAGAGCCGCTCCGTGGTGGACGTTCTGGCGGATCACGCCGGAGAGCTGGTGCGGACCGACAGCCCCAACTTTCTCTGCTCGGTGCTGCCGTCGCACTGGAGGTGCAACAAAACGCTGCCCGTGGCTTTTaagGTGGTGGCTCTGGGTGACGTTCCTGACGGGACCCTGGTCACGGTGATGGCTGGAAACGATGAGAATTATTCCGCGGAGCTGAGAAACGCGTCTGCCGTCATGAAGAACCAGGTGGCGCGATTCAACGACCTGCGCTTCGTGGGCAGGAGCGGCAGAGGAAAGAGCTTCACTTTGACCATCACTGTGTTCACTGGACCACCCCAGGTCGCCACATACCACCGCGCGATTAAAGTCACCGTGGATGGACCTCGAGAACCGAGACGTCACCGCGTGAAGCCGGACGACCCTCATAAGCAGTACACCGATCGCCTGAGTGACATCGAGCGTTTCCAGAGGGCCAGTCTGAGAATGAACCCTGGCAACGGGACCGCCCGCTCCCACCAGACCCATTACAACCCCTCCAGCACCACACAGATACCAGcattatgGCCAGATCAGATTGACCCTCCTGCACTGAAGACTTGCAAAGTTGAAGACGACTTACGCTGGTCAAGTACGGATCTGTTCCCTCAGAGGACGTCCTTCCCGTCTCTATCTCCATTAACAGCTCCTCGGTTCTCAGATTCACACATGCATTATCCGGGTCCCTTCACCTACTCTGCAAACCCGTCCAGCACCGGAATCGGTGGTCTCAGCGTGGCCGGGATGCCCACCTCCAGCCGCTACCACACCTACCTGCCTCCTCCATACCCCGGCAACCAGAACCAGAACTCCCACTTCCAGACCAACTCCTCGCCGTACCACCTGTACTACGGCACCGGATCCGGCTCCTACCAGTTCTCCATGGTTCCCACCGGCGGCACCGGATCGGGAGGTGACAGGTCGCCCACCCGCATGCTGACGTCCTGCACCGCGGCCGGCGGGGCCGGGGGCACGGCGGGCGGAAACAACAGCCTGCTCAACGCCAGCCTCGGCAACCAGAGCGACGGCGTGGATGCTGACGGAAGCCACAGCAACTCGCCCACAGCCATGAGTGCGTCCACACGCATAGACGAGTCCGTCTGGAGGCCTTACTGAGAAAACAGGAGACTGAGAGAAGTCGCTGAAGTTTAGAGTAGAGCTGAAAATCTTGCATGTTTGATCGTTCTGTATCTTCTATGACATGTCGATTGCTTCTAAGACCACCAAAGTGAACCCGCGAGAAAATGTGTCTGGACAGAAATGGACCTCCGCTGATCAAAACTGAAGGAGGACAGAAGTCTCACAGGAAAATGAGGTGTATATAGAAAGATTATAATTACGAAAAGGCATCCCATAGTAATATATCAGCAACTTTTCTTAccaaaaaagctgaaaaaccaAAGAGAACACGAGCCTGTATCTGAAAAAAGCCAATTTATCCAGCCTTACAAACCAATCTGCCTGAACGCTGTAAATCCCAGAGTGCTTCGCAACCATGAAAGCATGTCGTGCAGACAATATGAGAAAGCTTCACAGAGCTGCAAGACTGTGGGACTTTTAATGTGTAAATACgacaatgaacaaaaatgttacCCACAAGTTTCAGGTACTTTCCAAACTTGCCGAAATAGTCTTGAACTGGTGAGATGTGATCAAGCGTGGAGCTTTGTGAGATGCAATGTCAATTTCATAGAAACAGATTTTAGGGTGAATATCACTGAACCTGCCAGGAACATATTCAGGTCATATTTAATgagtaattacattttgcatgaagaaaatgatgctaattgtttttttaattttttacaaacattcgtttttgcatttttcattgtGGCATTGTTTTCATCGAAATGAAGCGCATTTGACCCCTATTATTGTAGcgcaataaaataatgatatattatttcatttgcaaatcatctaaatttacataaacatagcATCGTTTtcattatgcaaaaatattttttgcttttattttagggtgaaaTGTGATCTGGATGAGCTTTCATGAGATTCACCCTTTAGCTGCGGGTCCTCGATTTGTTGAAACGCAAAACAGTGTCTATAATCCAAAGACAGACAggtgtttgattttttttttcctcgcttCATGCCAAAATCACGAACAATTTATTCGTCTCTGAACTTGTGGAGACTTGCCTTTTTTGGAATAGtttttagagtatttttttttctcagtgttgATCGCTTTTTATGACTTTCTTCAGACTATTCGTTTGAGCTCAGTTTTctggtttgtgtgttttttttatttttatttgaatttttttttttttatttattcgagCCAAAGAGAATGCGTTCCTATTTTGGATCGTTTCCGGGTCATAAACATTTCCAGTTTTTGTTTTcggtctctttttttttttccaatcttttggattttctttgttttaatataaaattggAATTTGTGCTACTGTAATATATTCTTTCTAAATTATACAAAAGTTTTAACGTAATGCCTATGTTTTCCAATGCAGCtttaatgcactaaaacatttatttaagagGTTATATGTCCTTGTTAAACCACATAATAGAGACATTCTTATACCAGATTGAATTCCACATGATATTTAGTCATGTGCCTGAAAGGCCTCAACCATCGCAAGCCAAAGAATCCAACAATCACCTGTTGTCATTCCACGTCTCTAAAGTGTGAAAAATATGTTGCTCTAAGCACCTACATTATGTGTCTATTTTTCTTACCTTGTTCTTGGAATGACTGAAATCGGAGACAATAATTGGTGCACGTTTGAAAGCAGATCGTCTGTGATTATTTGAATAACAAAACCATGCACAAGCTCATACAAGGGGGTAAAGTGgccgtgacacacacacacacacacatacatccgCGTAACAGGTGTAAGTGAATATTTCAGCACATAACCCAGAGGTTTTTTCCCATGCTCACACCTGCTGCCATCACCTGAGGGCCGAGGGCCCCAAAAGAGCAAAGGAAACAGGTAGAAAGATGGATGAAGAGAGACGTATCTCCTTTCGCAATCGCTGGTCATCCTTCAGGCCTTGTTATCCAAGCAGAAGTGCCCGTGTTCAGTTTGATTCACGGCCGCTTTGATGCCTTTATGTGGGCGGTTATTTTCCTTCCCATTGTGCCTCTGCTTGATTAAGGCCCCAAGCTGCAGGCTACAGGAAAGATGGGTTTAAATGGGAGCTGGTCTAGTTACACCGATTCTCTCCTGCAAAGACTTCTGGGTAATAGAAACCCTGGGTAAACTATTGCTTCTGTGTCGTATGGTGATTCTCTCTCAGTGCCTCGGTCTGGATCTACTAACGTCTGTGGATATCAAATCCTGTTCGGTGTAACGGCTTTATTTCAAGTTTGATTGTCGATTATGGATCACGAATCCAAATTAAGATTTGCTGCCCCAAAATCAGACCCAAAACACATCTATTTATTTCCGCTGTATCAGTACTGATTGCGCGTTGCGTTGATATCAAGGTTCTGTTTCAAAACCtaacttttgaaaataaaggttctttactgGCATCGAAggtgaagaaacaaaaaaatcggAAAACGTCCTTTAGATCATTAAAAACGTCTTTGACTacgagttaaaaaaaaactatttgctgAAAAATTCTTCAGGAAagcaaaaaacgtttttatatgCAATTCAGCAAAACACCCTTTTAGAACCTTTATTGTTAAGAGTGTAGTGCGCTCCCTATGTAGGCAGCACAGAATCTGTTCCAAAGAAGTAAGCGGTGTAAACACGCCTGTGGGTTTCTCCCTGTGTGAAAGCGTTCTGAATCAGTCACTTGTTTGAAGGCAGAAGCCTATGTAAGCAGCTGCAGGTTTTGAAACACAACCCAAATGTTGCCAGTGAAGTGAATATCACTGAAGGCACTCATCAGTCGGTGGTGTTTGTAAAATGCACAGGTCCTAAAAGAGCTAAAAAGCACAACACACTCCTGTTGAACAAATTGTCTTTTTCACTCGTTGTACGTTTGTAATTTTGGTTCCCGAAATACGCTCTTTTGTTCCTTCATTGTGTGCTAATGATGTagttttttatgcattttaattaaaaaaagatcagGA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140004 lncRNA downstream 9094 17790884 ~ 17791890 (-) True G94619
TU139990 lncRNA downstream 78684 17721728 ~ 17722300 (-) True G94608
XR_006252401.1 lncRNA downstream 128461 17632249 ~ 17672523 (-) True LOC122356952
TU139972 lncRNA downstream 424747 17374750 ~ 17376237 (-) False LOC122356193
TU139854 lncRNA downstream 770921 17022103 ~ 17030063 (-) True G94516
XR_006252405.1 lncRNA upstream 38664 17892037 ~ 17900115 (-) True LOC122356989
XR_006252304.1 lncRNA upstream 49824 17903197 ~ 17910716 (-) False LOC122356279
XR_006252303.1 lncRNA upstream 52479 17905852 ~ 17910716 (-) True LOC122356279
TU140056 lncRNA upstream 87030 17940403 ~ 17994249 (-) True G94663
TU140073 lncRNA upstream 116840 17970213 ~ 17970976 (-) True G94672
XM_043255644.1 mRNA downstream 12853 17776719 ~ 17788131 (-) True chp1
XM_043255629.1 mRNA downstream 27133 17769381 ~ 17773851 (-) True khdrbs1a
XM_043255024.1 mRNA downstream 35724 17752801 ~ 17765260 (-) True LOC122356377
XM_043256329.1 mRNA downstream 64024 17733938 ~ 17736960 (-) True glo1
XM_043256393.1 mRNA downstream 69997 17722431 ~ 17730987 (-) True btbd9
XM_043255014.1 mRNA upstream 106664 17960037 ~ 17964870 (-) False rsrp1
XM_043255015.1 mRNA upstream 107586 17960959 ~ 17964870 (-) True rsrp1
XM_043255013.1 mRNA upstream 119503 17972876 ~ 17980109 (-) True rhd
XM_043254799.1 mRNA upstream 220358 18073731 ~ 18080606 (-) False fndc5a
XM_043254801.1 mRNA upstream 220358 18073731 ~ 18080606 (-) False fndc5a
unassigned_transcript_1930 other downstream 81278 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 81805 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1928 other downstream 1353222 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 1374449 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 1508618 16290154 ~ 16292366 (-) False cisd1
TU140311 other upstream 692208 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 692208 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 692208 18545581 ~ 18672893 (-) False LOC122356088
XR_006252356.1 other upstream 2014640 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 2290223 20143596 ~ 20143727 (-) True LOC122357145

Expression Profile