RNA id: XM_043255786.1


Basic Information

Item Value
RNA id XM_043255786.1
length 1384
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC122356736
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16302209 ~ 16304328 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAaaaacatgaagaaacaaagtttTAAACCCATCTAACAATCTCAGTTTGTACAAAGTCTTGTATTTCAACGGAAACTACATCTCCCAGAATGCAATGTGACGTGGCGTCACATTACCTGCCTGACGTCGGCAGCCGGAGTTCCGCGTGTTCGGATGTGTGGTTTATATCATACTTGAATGTGGAATATGATGGAAACTCAAGGGGTTTCGTCGATTATATTTGATTTGGATAACACGCTGGTCGACACAGCCGGCGCAGGGCGAATTGCCATTCAGAagGTGTGTGAGCTACTGAAGTCGACGCATGTGCAAGAAAGCCACATCAAAGACATCTGCGATCACTTTTTACAAAAGCTTCTCCACGAATCGTTCGACCCATCAGAAGGAAAAACAATAGATGATTTGAGGATCCGTCACTGGTATGAAGCCCTGCGGGAGACGCAGGGCACCGATCCTGATCCGGCTCTGGCCAGCAGCTGCTACTACACGTGGAAGAACACACGTTTACAGGTGCTGAGTCTTTCTCCTGAGGTTCGATCTCTCCTGGAGGAACTGCGGAAGAACTACAAACTGCTTCTGCTTACCAACGGCGATACTCAGACGCAGTGGGAGAAGATCGAAGCGGTGAGATGTGAAGGACTCTTTAGTTTGATGGTAGTCGGAGGAGATCATCCTGAGCAGAAACCGGCTTGCTCCATCTTCACTCGCTGCTTCGAGTCTGCAGGAGTTCGGCCGCAGGACTGCATCATGGTGGGAGATTCTCTCAGCACAGACATCCAAGGAGGCATTAATGCAGGTGTGCGGGCCACCGTGTGGATAAACAGTCACTGTAAATCTCTCCCGCAGGGCTCTGTGACTCCAGACTACACTGTTCCCAGTGTACTGAATCTGAGGGATGTTCTACTTGAACTGAGTTGATGTTTACGTAATTGCAAAAATGCGAAGATTTATATTAGCAACTTaatgttttaatctttaaaaaaaaaaaaagagtgattcTCTCTTGCAGTGGCCACcatgttgtcacatgacctgccAAATGACACTAATTCTAAATCTGTGGCAATAATATTAACCTGGAAATAAATCGGTGTAATTTGAGTGATAAGTAGACAAACCACTAGATGTCAGTTTTGTCAATCAAGTTAACAAAACCATAGTAAAAGGTATTTGCGTAATTACTGTTAGTTTATTGAACAGGACATAACTAATTAGTTATGTAGCCCTGTTCTAGAAACATTAAACTGTGTTGTGTGTCTCGTTTAGATTACAGttgcattaaaaagtgaaaagtacaaaattattggaattgttaatattaacagaaatattaatatttgccagtacctaaaaataatttaaattgtgGAATAAACAACCAt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01097 NANP; N-acylneuraminate-9-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139455 lncRNA downstream 334866 15967014 ~ 15967343 (-) True G94247
TU139429 lncRNA downstream 394718 15907270 ~ 15907491 (-) True G94232
TU139407 lncRNA downstream 416987 15877527 ~ 15885222 (-) False G94216
TU139382 lncRNA downstream 538464 15763424 ~ 15763745 (-) True G94200
TU139381 lncRNA downstream 539366 15762551 ~ 15762843 (-) True G94199
TU139518 lncRNA upstream 25814 16330142 ~ 16332347 (-) True G94298
TU139539 lncRNA upstream 72245 16376573 ~ 16376923 (-) True G94308
TU139696 lncRNA upstream 118338 16422666 ~ 16423793 (-) True G94411
TU139699 lncRNA upstream 125513 16429841 ~ 16430293 (-) True G94414
TU139701 lncRNA upstream 126346 16430674 ~ 16432430 (-) True G94416
XM_043254577.1 mRNA downstream 9830 16290165 ~ 16292379 (-) True cisd1
XM_043256346.1 mRNA downstream 12492 16279665 ~ 16289717 (-) True ipmka
XM_043254593.1 mRNA downstream 139456 16009687 ~ 16162753 (-) False pcdh15a
XM_043254968.1 mRNA upstream 30696 16335024 ~ 16361805 (-) False LOC122356349
XM_043254969.1 mRNA upstream 30696 16335024 ~ 16361056 (-) True LOC122356349
XM_043255806.1 mRNA upstream 128367 16432695 ~ 16445739 (-) False LOC122356747
XM_043255805.1 mRNA upstream 128367 16432695 ~ 16445736 (-) True LOC122356747
XM_043255680.1 mRNA upstream 165607 16469935 ~ 16487675 (-) True march5
TU139489 other downstream 9843 16290154 ~ 16292366 (-) False cisd1
XR_006252284.1 other downstream 139456 16011802 ~ 16162753 (-) False pcdh15a
XR_006252287.1 other downstream 139456 16014317 ~ 16162753 (-) False pcdh15a
XR_006252286.1 other downstream 139456 16014317 ~ 16162753 (-) False pcdh15a
XR_006252285.1 other downstream 139456 16014317 ~ 16162753 (-) False pcdh15a
TU139697 other upstream 121369 16425697 ~ 16426535 (-) True G94412
unassigned_transcript_1928 other upstream 143363 16447691 ~ 16447762 (-) True trnah-gug_23
unassigned_transcript_1929 other upstream 1414779 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 1415306 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 2241253 18545581 ~ 18672893 (-) True LOC122356088

Expression Profile