RNA id: XM_043255788.1


Basic Information

Item Value
RNA id XM_043255788.1
length 5128
RNA type mRNA
GC content 0.43
exon number 17
gene id fhip2a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16964295 ~ 16975489 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCGCTTTGGCAGAAGGGATCTCGGTGTTTGTTCGAGCGCAATGGAAGTGCCACCGTGGCCTTAAAAAGACAAACCCGTATCACTGTTTCAGTGTAGCAGTTCGTGGTTTTCTTAACCTGCGTTACCGTGTGTGTTCAAATGTACATACGCACTAGCTCGCTATTGGTATACATGTATTTGAGTGTGTTTTAGTGTAAGTCTTCAATCTGGATCACCGCAGAAGGAGCAGAGGGAAGAGAGAGGAGATCTCCAGAGCAAAACTCCTCCTGTCCAAAAACAACATGTTCTCCAAATTCACCTCTATCCTACAGCACGCTGTCGAGGCGcTTGCGCCATCACTGCCGTTGCAAGAGGACTTTGTCTATCATTGGAAGGCCATCACCCATTATTACATAGAAACCTCAGATGACAAAGCCCCGGTGACGGACACCAACATTCCCTCCCATCTGGAGCAGATGCTGGATATTCTGACCcaggaggagagggagagagagtcaGGAGAGACGGGTCCCTGTATGGAGTATCTTCTCCATCACAAGATCCTGGAAACACTCTACACTCTGGGCAAAGCAGATTGTCCTCCTGGAATGAAACAACAGGTTCTGAGTTTCTACACCAAGCTGTTGGGTCGAATTCGCCAACCACTCCTGCCTCACATCAATGTGCACAGACCTGTACAGAAACTGGTCCGCCTGTGTGGCGAGGTTCTGGCTGCTCCTACAGAGAACGAAGAGATCCAGTTTCTGTGTACTGTCTGCACAAAACTTAAACAGGACCCTTACCTCGTCAACTTCTTCCTTGAAaataagaataaaaagcTGGATGCTGCTAAAGATGGTGGAGCTGATTCGGTGAAAGAGGATACATCTTCCCCAGATACGGGGCAAAACCCAAACCAAAGTCCCGGTCTGATCACATCTCCACTGAAAGAAGCAGCAGCCTGTCATGCCAGCAGCCCAGGGGAAGCTAGTCCATCCTCCGTCCACACTATACTGCCAAACAACGACAACTACAACCTAGTCAGCTCACTTCTTAACCTCACTAAGAGTCCAGACGGGCGTATTGTGGTGAAGGCATGTGAGGGTCTGATGCTCATAGTCAGTTTGCCTGAGCCAGCTGCAGCCAAATGcctcacagaaaacacagaactCAGTCAACTTCTCACAGATCGGTTGGCGCAGTTCTACCGGGCCCTTCCCCAGTCCATGGACCCTCTTGACATTGAAACTGTGGAGTCTGTAAACTGGGGgTTGGATGTGTATACCCTAAAAGAAGATGCTGCAGCTTTCGCAGGCAAACGTGCACTTATTTCTTTTCTATCGTGGCTGGATTATTGTGATCAGCTCATCAAAGAGGCACAGAAGACGGCTGCTGCAGTTCTGGCTCGGGCTGTGAGAGAGCGCTTTTTTGTTGCCATAATGGAGCCTCAGCTAATGCAAACGTCAGAGGTAGGCATTCTGACTTCAACGGCCCTGTTAAACCGGATCATCAGACAGGTGACATCAGAAGCCCTGCTTCAGGAGACTGTTTACTTCCTGCTGGGAGAAGAAACGGGACCAGAGACGCCTGCTGGCATTACCCAGCATCCCCTCAGACACAGACTCATAGAACATTGTGACCACTTGTCAGATGAGATAAGCATCATGACCTTGCGTCTCTTTGAGCATCTGCTGCAGAAACCGTGTCAGCACATTCTGCAAAACCTGGTGCTGCGCTGCTTGGAAGAACGCAACTACACGGAGAACAAACAGCCAGAGGAACGAGAGGAGCGCGAGCACATGGAGAACGGCCAACCGCATGACGCCGTAGATCTAGAAGAAGACCCGCTGTTCTCAGATCTTTCGCCTGATAACAGACTCTCCAGCCCTGATTGGTTAAGCTGCTCTCCACCACCAAGCACAGAACACACAAAGCCTGATGGGAAGACGGAGGTTCACAAAATAGTTAACAGTTTCCTGTGTTTGGTTCCCGATGAGGCTAAGTCATCCTATCAGGTTGAAGGCACAGGATATGACACCTACTTGAGAGATGCACACAGACAGTTTCGGGACTATTGTGGAGTTTGTCAGAGGTGGGACTGGCGTAGCAGTCCAAAACCCTTCGAGAAGTGCAATCTGGACAGTCCTTTTTCCGAAGGGCACTTCCTCAAAGTGTTGTTTGACAGAATGGGGCGAATCCTTGATCAGCCATATGATGTTAACCTGCAGGTGACGTCTGTGTTGTCTAAGCTGTCTCTGCTGCCTCACGCTCATCTTCACGAGTACCTGCTGGATCCATACATTAACCTGGCGCCAGGCTGCAGGTCTCTCTTCTCAGTCATCGTCAGGGTGGTTGGTGATTTGATGTTGAGAACTCACCGCATTCCTGATTTCACCCCTAAACTCCTATTGGTGAGGAAGAGACTGCTGGGACTAGAGCCAGAAGGAATGAGCGTTGATCACGTGACGTTGCTCGAGGGGGTGATCGTTCTGGAGGAGTTCTGCAAAGAGCTCGCGGCGATCGCGTTTGTGAAGTTCCATGCATCCGCCTCCACTTCCCCTTGATCCTCTCACCGCTGTGCACAGGACACAAACAGATGAATAAACAGGCGAAAGGGGGCGGATGACACAGGAACGACAAACCCTACTGCACTCATCCCTCAGCCCAGACTGCTGCCTGCGGCAGGACTCGCATTCAAGGATGTTTCATTCGCGTTATCTCTGGGACGTTTCCATAACCCGTACTGTTTTAAAGGCACCGGAGAGGAAAATTTTCGTTATAAGAATTGTGACTCTCGTCGAACTGACCGCCTGGGGAGGATTTTGTAGCATTgacatgtaaagaaaaaaagtataacacttcatgccaaaaaaaaaaaattaggttcAAAACGAAATCGATTTAAATTCGATTAAAGCAATGGAAAACATACAATAAGTAAAAAGAAGAATgtgctaaattaaatatttaattattaattattgtttgtcACTTGCAGTATCGAAGATACTGTCATATTTTGTTCTCTGTTCTTCTGAGAAAAATAGCGCTGATATAAATATCTAATGCAAAGTTAATTTGTaatgaaaaattacaacaacTCAGGATTCAAAGtctatctgtttttaaataattggaGAACCAGAAAACGAGCAACATTTTAAGCGAATCCTCTCGTTTTTGTTtgtcacctttttttttttttttttttttttttttttaagcgaacAGAAAAAGCAATGTGGTCTGGATTGATTTGACATTGGGCACATTTGCACTCAAACCAGTTTCCACTGGTGCATCCCCAGAGAGCCTCATCCTTCATGTTTTGACAGTGTTCCTAAATCGTTTTAGTTGTTAACCTCGACATGTTATGTGTGTGCCTTGGTCTCAGCTAGACAGTAGCTGCGTCCTTCGTCCCGTATCATCACgtatttattatagatttaagaaataatttcaaaggaatagttcacctaacaACAGTGATGATGCATCTGTCCTTGCATCGTTGAAACTCGAGAGTTTCTATGAAACGGCATGCAATGGATGTGACATGAATAGTAACAGACACAAAAAGTACCCTAAAAatggttcatttaaatttgtgCGCTTTCTGCCAAGTTGTCCAGTACTTTTGTTTAAATGGGCAAAATTTTATAAATCAAGATTAGGAAGACGCGGAGTACAGTTCTTGagtaataaagtaaaatcaatcatttttatacttttattgtgcttttttttttttttttttttttttaaagcttggtAGCAAAAAATCACAGAGTGAATGGAAATATGACTTGGAACaacattagggtgagtaaattatgacgaaatgtaaatttttaggtgaactattccttttgaAGCACAGAATCTGGTTTAGAGTTTAGCTGCTTCCTTACAAGGGATCTTTAACATTGTGTGTCTGCGTTACTTGGCAGTGTGGTATTATACCAGCAATAGTGTTATTCATCAAGCTGCTCTCTTCATCTGCTCCTGCTCATCGTAAAGCACATGCTGTGCTAAATGCACACTGTGTACATTTGGCAAAGAAGGGGCACAGCTTGAAGCAGGGTTGggttttttgattttatttttggatggcTGGCTTCCAGGGCCTTCTCACAATGCCTTGGCATCTTGGCTTTATTTAACAATCTTTACAGGGTTTAGATTTAAGTATCACAATCATTACTTTGCATTGGTTCCATCCatgatgtatgtgtatatttaaagcaCATTGGCATTGTGTAAaggtttgcatttgttttcgAAAATTGCACACTAGTGTCAGTATATGCATTTtactgtctgtctttttaattgtattttctttaaaaccaaAGGATGTATCTTTACAGGAGCAACATGAGAgcaacagaaagaaaaataatgcatcttttcctttttttttaattcttgatCCATGCACATTTTATACCGAGTTCAGAACTGTGTATATACAAATGTACAGTTATAACAGTAGTGATGTCTGGTGTAAAATGCATGCGAGGTCATATCTGTTAATATGCAGCGGAGGAAAGCATATTCCTGCTCTATCTGACCTTCCATTGTTTTTTGGGGGATCATTTTTGTCTTCTTTCGCCTATTTATGGGGATATTTGTGATGccttattttaaatgcagtaattgGTTACAGCCTATAACCTCTGCAATCTCAGTTTGGAGttatacatctaaaaaaaatcgGTCTTTTATTTTACCGTcaatcttattttttaaaaaagttgtaAAGCAGTGTATTCCATTGGTTCAAATGATTCTGAGCTTTCTgctgtacatttaatttagttttctctGAATATGTAATTCATCCAAATGCTGTTCTGCTTGACTGATTTATTCCCGTCACTTGTACAGATGTAGCTCACTCGTTTGAGAGACGTGTCAGGAGGTAACTTCTGTCGATTTTTGAGCGCCACTGCCACGGTGTCACAATGTGACACTTTTTTTAGAAGAACAGAGTTAAATGGTCGCCATTTTAGGGATGAAATGTCATAAGATCTCAGTTGCTTGATTCCGCCGGGCCTCTAAATCTCTGTAACGAGGTTTGTTGTGTCCTGTGGCTTACTTTAATTCATTTCACTCCGTcctaattaaaacatttgctttcTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139762 lncRNA downstream 369564 16593425 ~ 16594731 (-) True G94455
TU139759 lncRNA downstream 395045 16567915 ~ 16569250 (-) True G94453
TU139711 lncRNA downstream 445469 16515857 ~ 16518826 (-) True G94425
TU139701 lncRNA downstream 531865 16430674 ~ 16432430 (-) True G94416
TU139699 lncRNA downstream 534002 16429841 ~ 16430293 (-) True G94414
TU139834 lncRNA upstream 9017 16984506 ~ 17015657 (-) True G94511
TU139837 lncRNA upstream 9017 16984506 ~ 16992084 (-) False G94511
TU139854 lncRNA upstream 46614 17022103 ~ 17030063 (-) True G94516
TU139972 lncRNA upstream 399261 17374750 ~ 17376237 (-) False LOC122356193
XR_006252401.1 lncRNA upstream 656760 17632249 ~ 17672523 (-) True LOC122356952
XM_043255598.1 mRNA downstream 1816 16923937 ~ 16962479 (-) False ablim1a
XM_043255597.1 mRNA downstream 4066 16923937 ~ 16960229 (-) False ablim1a
XM_043255592.1 mRNA downstream 4066 16923937 ~ 16960229 (-) False ablim1a
XM_043255599.1 mRNA downstream 4357 16923937 ~ 16959938 (-) False ablim1a
XM_043255594.1 mRNA downstream 7704 16923937 ~ 16956591 (-) False ablim1a
XM_043255906.1 mRNA upstream 237444 17212933 ~ 17365849 (-) True LOC122356833
XM_043254697.1 mRNA upstream 400504 17375993 ~ 17387006 (-) False LOC122356193
XM_043254696.1 mRNA upstream 401229 17376718 ~ 17387004 (-) True LOC122356193
XM_043254725.1 mRNA upstream 571925 17547414 ~ 17548604 (-) True LOC122356215
XM_043256024.1 mRNA upstream 723448 17698937 ~ 17713567 (-) True zfand3
unassigned_transcript_1928 other downstream 516533 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 537760 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 671929 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 801542 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 743618 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 744145 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1570092 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1570092 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1570092 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile