RNA id: XM_043255790.1


Basic Information

Item Value
RNA id XM_043255790.1
length 1277
RNA type mRNA
GC content 0.39
exon number 8
gene id sft2d1
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23447333 ~ 23464851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAATACGGGTGGGGAAAAGTAACGTCTGATTTGTGTCAATGCTGAACTTCGAGGAAGTGTTGAATAATTGCAACTGAGCACTGTTTCACCTGACGAGCAACGATGGACAAGTTGCGTCGTGTATTAAGTGGACGAGAGGAAAATGAAGAAGTGGGACTTACAGCGCAGATCATGGACGGCACAACACTCAGTTTCAGCACACGGCTGAAGTggtttgtcatttgttttgcaGGGGGTGTCCTGTGCTCAATACTCGGAACCGCACTCCTCTTTTTACCCAAAGCTGGTGTTAATTTGTTTGCTGTATTCTACACCCTCGGAAATATCGCAGCAATTTCTAGCACCTGTTTCCTAATGGGCCCATTCAAACAGCTGAAGCGAATGTTTGAGCCCACCAGACTCATAGCTACTATTATGATGCTGCTATTCCTTGTGTTGACGTTATGCGCAGTGTTTTGGTGGGGCAAAAAGGGTTTGGCGATCATCTTCTGCATTTTGCAATTTTTGGCTATGACGTGGTACAGCATCTCCTACATTCCATTTGCACGGGATGCTGTTATTAAGTGTTTCACCTCCTGTTTGGGCTGAACTATCCAGTATTTCAGGTCTGCACAGTAAATATggaagaaacaaaacaagtttttctctttcatctcCAAACAACACTGTCCTCCTTGACcttaaaacatttcctcttttgtcttaatgtaataattttaaatgaacattgtgTAATATTAAGAGTGAATgtgtaatatttgcatttattacgagcctaatttctttttttatctttaaggcgtttttgttttccttttttttttggtttgcgtGTGGCtgataaatgcttaaaatatgatACActgccagtaaaaaaaaaaaaaaaaaaaagtgccttgTGATGTTTATGAATGAACTTATTTGCTACTGTTCAGTTTTGTACAGAAAAGGAATTGCATTTCTAccaaatatattaacaaaaaaatgaaagaaaagccTTTTCGTGCGATACCACGCACCAAACGAATAAAACGTGTTCTTTCATTGGTTTTTTGATGCTATTTGACTGTTGAACAGAGTTAATATGTCATAATCTTCTGACTTATGCGTTCAGAATAATGATGAGTATAATGCTGGTTGTTTGAGCCCAGGGCAACTCAGACAGCTGTCTCACCGCTTTCTCTGGAGATCAGATGATGGTATTCTATCCATCtatgtgctcttttttttgtgtttcatctACAATGTCTCTGTTTAATAAACCTATGCCATCATA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142211 lncRNA downstream 3550 23439277 ~ 23443783 (-) False si:ch211-130h14.4
TU142128 lncRNA downstream 269237 23176802 ~ 23178096 (-) True G96117
TU142099 lncRNA downstream 292838 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA downstream 292838 23152205 ~ 23154495 (-) False G96108
TU142019 lncRNA downstream 417433 23017198 ~ 23029900 (-) True G96061
TU142295 lncRNA upstream 73927 23538778 ~ 23542300 (-) True G96254
TU142315 lncRNA upstream 462480 23927331 ~ 23928060 (-) True G96265
TU142336 lncRNA upstream 577677 24042528 ~ 24067735 (-) True G96279
TU142347 lncRNA upstream 605309 24070160 ~ 24070488 (-) True G96286
TU142361 lncRNA upstream 642582 24107433 ~ 24107818 (-) True G96295
XM_043254537.1 mRNA downstream 1167 23444179 ~ 23446166 (-) True prr18
XM_043254534.1 mRNA downstream 3270 23429646 ~ 23444063 (-) False si:ch211-130h14.4
XM_043254535.1 mRNA downstream 3270 23429646 ~ 23444063 (-) False si:ch211-130h14.4
XM_043254536.1 mRNA downstream 3270 23429646 ~ 23444063 (-) True si:ch211-130h14.4
XM_043256098.1 mRNA downstream 18269 23425032 ~ 23429064 (-) False tbxtb
XM_043256259.1 mRNA upstream 938 23465789 ~ 23505692 (-) True rps6ka2
XM_043254854.1 mRNA upstream 48964 23513815 ~ 23519654 (-) False rnaset2
XM_043254853.1 mRNA upstream 48964 23513815 ~ 23519653 (-) True rnaset2
XM_043254855.1 mRNA upstream 48964 23513815 ~ 23519044 (-) False rnaset2
XM_043255964.1 mRNA upstream 168865 23633716 ~ 23995593 (-) True csmd1a
TU142010 other downstream 451734 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 624074 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 624819 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 1004047 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 805463 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 878010 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 934272 24399123 ~ 24403644 (-) False fgf8a

Expression Profile