RNA id: XM_043255839.1


Basic Information

Item Value
RNA id XM_043255839.1
length 1363
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC122356780
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20025669 ~ 20036473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGATTTGAGCAGACGTTGGGTGCATGTGGAGTTTTGCTCTCTGCGGCGCTGTAAACGGTTTACTCATGCAGACGCCTCAGACGCTCGCTGCAGACAGAAGGCCGAGCTCAGCAGGAGCCTGGAGGATGAAAGCTGGTTTCCATGGAAACGACGGAATCCAATTAAAAGGGCCATTGGTACCAAAGCAGCCCGAAACACGGAACAAGGAAACCCCGAACTATTTATCATTCGGTTTCGAGCTGTCCTTCAGGTGCCGGAGAATAATCAGGGAGAGGAGTTCGAGCTCTCCGCCAGGACAGAGTGATGTTTATGATGATCAACAATCAGCAGAGGATGGACAAGCAGCCTTGAGGATCAAACACTGGAGAGGACACTTGAAAAACAGCCTTTCGAAAGTCGAGTTTGGAGGATGCTCACCGGTTTTGGGTGAAGACACTAATTGCTTTGACAGTGTTCACCAGGCCAACTCTGAACAGCGTCCTCTCGCATCCGTGCATCACCGAGGCATCGGTTCGGAGGAGAGCGCGAGGTCAGGAGCGCTGGCCGCCGCGgagttgccatggcaaccgctCCACAGCCAAAAAGCAGCTGCGGCGTTCTCTCCTTCTGAAAGGGCTTGTGCAGAGAAGAACGATTCGATTTCGAACCCGAACGATGGGCTTCGTACAAATCGACCCGTTTCGGGAGGCGGGGCTTGGAGGAGAAGcgataatATTGCCTGGGAAACACAACAGTGTCTGCGCCGGCTGCTCCGCTCGGAGATAACAGCGTGTCATCAGAGCGCTGGCGTCATTTGGCTCCGGATGGGACCGTGCAACTCGATCCACCTTTAAATGGAGCGAGACAAAGACTCAGCGTTGGGTTTCCATCACATCAGCGTTTAGATGCCTTGGGTGCAGGATCGAGTTTGACCAGCCTGTCCAGCCTGAAGAGCAACTACAGAGACGTATGCAAACATGAGTCCCAGCCGTCACCTGATCGTTACGGCCGTCTGATGAAGCAGGTGTTGATGGGAGGTTTGGGCGGCGCTCTGTGGGTGTGTCGCCCTCAGCtttccaagaaaaaaaagggcCGGGCGATTTCTGTGTGATCAGGGTGATGAAAGACCGAAAGGATGACTCAGTCCGGTTTCAATGCAGACGTTTACAATTTACAAAGAGCACTGCGTTAAAGAGGCAGCGTCAAATATTACGACCAATCTGAAGACTGTAAACTAACTCtaatcattaaaatagttcaaatactgtacattttataaaaccaGTTGCCTTGACAACTAACTGAAATGATCTGAATTTAAACTAAAagtctgaaatgaaaatgtactaatgctaaaaatagtaataattataaaaaaaaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141149 lncRNA downstream 106847 19921002 ~ 19921640 (-) False LOC122357123
TU140781 lncRNA downstream 181953 19846301 ~ 19846534 (-) True G95190
XR_006252305.1 lncRNA downstream 192834 19818053 ~ 19835653 (-) True LOC122356282
TU140737 lncRNA downstream 358156 19669709 ~ 19670331 (-) True G95147
TU140683 lncRNA downstream 435111 19591872 ~ 19593376 (-) True G95110
TU141188 lncRNA upstream 38898 20075371 ~ 20075937 (-) True G95469
XR_006252294.1 lncRNA upstream 71718 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA upstream 78253 20114726 ~ 20140686 (-) False LOC122356209
TU141230 lncRNA upstream 200205 20236678 ~ 20238227 (-) True G95506
TU141232 lncRNA upstream 228253 20264726 ~ 20275256 (-) False LOC122356211
XM_043255840.1 mRNA downstream 3226 19996649 ~ 20025261 (-) True LOC122356781
XM_043256389.1 mRNA downstream 106818 19909195 ~ 19921669 (-) True LOC122357123
XM_043255586.1 mRNA downstream 121426 19862530 ~ 19907061 (-) True disc1
XM_043255587.1 mRNA downstream 125005 19862530 ~ 19903482 (-) False disc1
XM_043256075.1 mRNA downstream 339554 19685919 ~ 19688933 (-) True map10
XM_043255693.1 mRNA upstream 64586 20101059 ~ 20103872 (-) True irf2bp2a
XM_043255630.1 mRNA upstream 106076 20142549 ~ 20145468 (-) True tomm20a
XM_043255557.1 mRNA upstream 113985 20150458 ~ 20218900 (-) True arid4b
XM_043256232.1 mRNA upstream 209014 20245487 ~ 20264253 (-) False b3galnt2
XM_043256231.1 mRNA upstream 209014 20245487 ~ 20264250 (-) True b3galnt2
XR_006252356.1 other downstream 121425 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1355594 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 1355594 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 1355594 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 2308781 17719634 ~ 17719706 (-) True trnav-aac_26
XR_006252430.1 other upstream 107123 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 443452 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 444970 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 452312 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 457169 20493642 ~ 20496864 (-) True G95511

Expression Profile