RNA id: XM_043255906.1


Basic Information

Item Value
RNA id XM_043255906.1
length 7264
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC122356833
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17212933 ~ 17365849 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATATATGAGATTTGTGGTCATCATGGACGAGGATATCAGGGCACCTATATGACAGTCAGAATCATTCCCACCGTTCACCCCATTAGAGACGGCCTCGCAAATGTGTACACGCGGCGCTGCTTGTCCTCCGAGGAGAGCGCAGCTCCTGCGAACGCTCAGATTGTGCATTCTGGGCAGACGTGTGTGGTGAAGGAGGACAACATCAGTGAAAGGATCTACACCATCAGAGAAGGGGACACTTTAGTTCTGCAGTGTCTGGTCAAAGGACACCCGCGGCCTcagGTGCGGTGGACCAAGACAGCAGGCAGTGCTTCCGACAAGTTCCAGGAGACGTCCATCTTCAATGAGACCCTGCGGATCCCCAACATCCAGAGAGTGCAGGGCGGCCGCTACTACTGCAAAGCTGAGAACGGGGTGGGGGTGGCTGCCATCAAGTCCATTCGCGTAGATGTGCAGTATCTGGATAAGCCTGTGCTCACGGTGCACCAGACGGTGGGTGATGTACGAGGGAACTACTATCAGgagaaaacagtgtttttacGTTGCACGGTAAACTCCAACCCTCCTGCTCGCTTTATCTGGAAACGAGGAAATAAACAAATCGAACAGAGCAAAGACAATGGAGTGGATATCTACGAGCCTCTGTACACACAGggCGAGACAAAGGTGCTGAAACTGAAAAATCTCCGTCCACAGGACTTTGCTAATTACACCTGTCAGGTGTCCGTCCGGAACGTGTGCGATATTCCAGACAGCTCCGTCACCTTTCGCCTCACCAACACCACTACACCCCCTGCTCTAAAGCTGTCTGTTAATGAGACGTACGTGGTGGACCCAGGCCAAGACGTCACTCTGTCGTGTGAGGTAACATCAGGCTTCCCCACGCCTACGGTCAGCTGGTCGCGGTACCCTGGATCCCTCCCTCAGCGCTCCATGATCCGGGGCGGGTCCCTCACTCTCCGGTCCGTCACTCCCGCTGATGCCGGTGTCTACAACTGCACAGCCGTAAACAATGTGGGAAACCCTGCGAGAAGAACCGTCAACCTCGTTGTGAGATCCATGAAGAACTTAACGTTCCAGATCACGCCGGACTCGAACAAAGACGGCGAGAGCATACAGATGGGTCGAGACCTCAAACTTTCCTGCCACGTCGACGCTCAGCCTCAGGACAAGGTGAACTACACCTGGTACAAGAACGGAGCTCTCATCTTCCCCACCGACAGCCTCATTGTGCTGCGCAGCGACCCGGACATGCCGGCCGGTACCAGCAGCCTTGAAATCGTGGACATGAAGTTCAGAGATCAGGCCACCTACAGCTGCGTAGCCAACTTCCCCGGGAGCAGCGTTCCTGAGCTGAGAGTGGACGTGAACATCACGCAGAGCAGCGTCGTTCCTCCTGTTCTGAGTGTGCCAGTCGGAGGGGGTGTGGTCAATGTCAGTGAGGGCGGGCCTGCAGAGCTTGTGTGTTTGGTCGATGGTAAGCCCCGTCCACCCGTACTGTGGTCTCGTGCAAACAAGGACCTGCCCATGCCATCGGGGGATTGGGTGGTGGAAACACGCGATGGACGTTTGCGGCTGACCAATGTAACTCGGGACATGATGGGGGCGTACCGCTGCCAAACCGCTCCGTACAACGGCCTAAACATAAAACGCCGACAGGCTCAGGTTCAGCTCAACGTGGAGTATCCTCCCGTTGTGGATCCAGTCCTGCTGGATGTCCGTTCTCAAACGTTTTCGACAGTCAATCTCCGATGCCTGATTCTCAAGTCCAATCCAAACCGAATAGCCAACGCCCGCTGGTATCGCAATGGGTTGCCCGTCCGAACCCCAACGGTGGACCCTCAAAGTGTCCCTCAGCTCAGGTTCAAACTAGACACCACTAACAACGGCACTTACGAGTGCAAAgtgaacaatggagtcgggacCTCAACCTGCACCTTCGTTGTGTCTGcTCAGCCGTATAATGCAGAGTTTTACTACGACACTCCAAACCCCATTCGCACCTTGAAGAACAATTATTCCTACAATTTACAATGGACACAGAAAGAGCCCGGCGCTGTCGACAAAATCATCGGCTACTGGATCAATGTCCAACAGAACCGACAGACGATTTTGTCCAAACAGATCACCACTAAAGAGCCGGTGAAAGGTGTGCTGATGTCTTACACGCTGACGGACTTACGTATTCCTCTGTCGTATGAGGTCAGCCTCACTCCCATAACCAGCTTCGGCACCGGGAACACAGTGACGCGCAGCATCCAGTACTCCGAGCCCTACACTTACCCAAGACCTTCAGaTCATGTGTGTGGGTTTGAGGACATTAGGATATGTGGGTTCACTCAAGACCGCAGCGATGTGTTTGACTGGACCAGACAGAACCATCTCACACAGAACCCCAAACGATCGGTCAATACAGGACCGGATACAGACAGGAGTGGGACAAAAGAAGGTTACTACATGTACATCGAGACGTCAAGGCCGCGTCAAGCCGGGGATCGAGCTCGTCTTCTCTCTCCATTGTACAATGTTACGGCGGCCAGAGGACCAACAGGGACCACCAGAACCCCCTATTGTGTCTCCTTCTACTACCACATGAACGGAAAACACATTGGTACTCTCAATGTTTTGATGAGGGTGAAGAGCATCGCCATTGTGGATTCGGCCGTCTGGACTCTCTCCGGACACCAGGGGCCCGAATGGAGGAAGGCAGATGCTGAGATCTATCCGAGCGGACCCTTCCAGGTGGTGTTCGAAGGTATCCGTGGAAACGGCTTTGAGGGAGACATCGCTATCGATGACGTTTCTGTTACCAAGGGGAAATGCAAACAAAAGGATAGCGTGGACAAAACAGcagtTCTGTCTGGGACACACCAGAGTCTTCACCTCCTTCCTGAGATCGTCCAGCTGCTCTGCACCATCTGTCTGACATTCCTCCTCAGATGATACAGATACCCCTCAGCACACACACGGCCAGCGTAGGACACCCCCCCTGCGGCAGCAATAAGTACTGCCCCAACACGTGACCACCCTTCCTGCTACTGCCTCCTTCACTTCCTCCTGTTTCTCATTCCCTAGCTCAAGTCTACCTTTTCTTTGGTTTCTCATCATCTTTGCGGTCACTTGTTGAGCTTGTGTTTGCTAAGTGGCgccttttatgttttatgtaagcATAAGTCTGtttgattttctgcatttctgtcTATGTGTCTTGACGTCTTCATCTCAGTCGTCCCCTGTGTATGTATCTGACACACCAAAGTGTCAATTATTACCAAAGATGACGGAGGGCTTACAGGATGAACAGACGGCTGAAAGAGCAACAAGGATGACCTTTCCCCAAATGAACTACTCTTTCCACAGACTCAAGTGCATGGAGATGTGATTTCCTTAAGACGCTATGATTGCAAGGAATAACTTGAGCCGGAGCGGATGAGTGAAACAGGTGGTCTCGAAGTTTCCGACGACCTGCACGTGTACATGATATATTGGAAAGTATCAAGCTGCAGAAAGGACAAACGGACTGCAAACTGCAACTTCTAGGACTATGAAAATGTGAAACTAAAGAAGCACaaatttatatcttttttttttttgtagttattttggTTCCTTTACGTGGTATACCGTCAGTCTGGGTTTGCTGTACACTTCTCGTCTTTTGGCTTTCTTTAGCAGAAACCGCGTGCCACTGCTGCATTGCCGTTCAGTTCGTAACGGGGTGGAATTCGATTCAGAAAAACGACACAATGTGAACTTTGGACCAGAAGAGCATCAGTTACCTCACCCTCACTCTACGAGAACCATAAAGCACCTGGACTTATGAGAATGATCACTTTCAGCTTCAGTCAAACTGCCGGGAGAGTGTTGACTGGGTCGGTCGTTCTCGCTCAGCAATAGGACCGTACCTCTAACTGCAATGGATATGATTCGGGCACACAGACTCCAAAAGATGGACGCCTCTGGACAGATAAACTCCACTCTTGGCTGTAAGGATCAAGAATGTCATTTTGCATAGTGTTAGAGAGAAATCGCATGTACATGCAAGCTCTTTAAGGGTTGCCATTGACAAACTAcagacatattttattttagaagttTTGAGATGACAAGCAGTGTTGATGTGACAAGTTAATCTATAAGACGCAATGTTCATAGTATAATAATGCTGCATTCCATTTGCATCGGAAAGTTGGACTTTCTAGCTTCCTACTTGGAAAATTGCAATAGAATGCCATTCGAGGTTGAAAACCACAGCTTTTGGTAAGATGGCGGCATCCAGTAAAGTGCACACATTTctaagcaaataaaatacatcgATAGGTCAAAGTTCCTGCATTAAACGATGATCAAACACATCTGCAGGTAAACGATCCTCTAAGATGGTAATCATCCACCTGCAGAACAAATGCTAGATCATTGATCCACTAATATGGCTGCTAGGGACTTCTTTGTTGACAATCAAGATCTGGACAGCAAACGGTAgcattgccattttattttctcGTGCATCCTTTTCCGAACTTTAGAGGAGCGCCTTAAAGTCGGAGACGTCGAGTAGGAATGTTCCACGTCTGGCTTTGAATGGAACGCAGCATAAGTCACAGATGCCGATGGGTTTAAGATTCAGATGCAATACGTTATGGATGATTTTAtgtaaacgaaaaaaaaaaaagtaggctaCCTTCCCTGgaactctttttaaaatacGTCACATTacgtaaaataacatttaagcaCATGGTTACGGTTCAGTAGCAATATGTGACTGTCAAAACATGTAAGGGCCGCCTGTGTTCGGTCCTTTTTGAAGTATGTTTTATCACATTTATCATCAGTGCAAGGTAAGGGCAGGCACAGAATTATAAGAGCGTATGATGAAAAGAAGGAACCATTTGTGCCTCTGTTTGAGTGTCCTTTATCGGATTCGCGTATGCTTAGATGTTACGGTGCAATCGTATATCCAGTATATATTTCAATTGCTTTGCTCTAGTATTACTCATACTGGTAGTTCCATCCACAGTGGAGCTTTAAGGTAAGTCTGTTTACAATCATAAAATGCGCAAAATGATTTTCCGGCTTGTATTATACGCTCGTGCTCATATTTAACCAGTTCATATTTATCCTAACGTGGCGTACGTCTGTCGCTGTTGAAGAGATTATCATAGACTCGCTCCTCAGGTAATTCCATAGGTAACAGGGACAGGGCCTGGAATGATTCAACCCCAGTCCAGGTTCTCCTACAGTAAAAGACACTCCCGCGGCTGTAATACTGTTCCTCCTGTATGTTACCGTAAACGCTCTGAACTCTTGCACAATGCCTTCACTACATGTCATGTATAACCAGCTATCGTTTATAATCCATGCTACGTTTAGTAGAACCTACTACAGGACACGAACGATTAGATTTAACTCAAGAAGGGAGACGAGATAAGTGGAGGGTTACGCCGTTTTCACGTGGCAGGATAGCGTGCGTTTACGTATTCTTTTAGATACCCTGTCGTGTGTTTCGGTGACATCCAGATATTATCCAGAAGCCGTCGTCCATGTCCATGATTGTTTGTGTCATTCTTCGTTTTTTGTATTCAAACCGTGTCCGATTGTTTCATTTAAACGGATCCGGTCTGCATTTTATTACTACGGTTGGAGTCGGGATCTAAATGCTGTGCAATATAAGACGGAAAAGTTTTAACATGCAATTCGAAAATGTCGAAGCTCACGTAACACAGGAAGTGCACCATCACCCCTGATGATGAGCTAATGAACGTGAATGTAATCTAATTAGAATGTGAAATCTTACTGGCCGACCTTCTTTGCAttgtaaatgtgcaaaattCAGTGGAATGGATTTAAATATGGCACGATGTGTTAAATGGAGATGGAAGAGCATTGCATAGTAATATCAGCTTAATAACATTAGCCAAAATACAGTGTATAGTAAATGAAAGGGTTATGTAAAAATCGTCTGGAAATTCCACGTTCACATTTTTCTTGGCTGCATTCACAGATTACAACAGAACATACGAAGTTTGAAAGCATCTTTAAGaatgacattttctaaaatgGTTGACCTTTTggaatactgaaatatttcacACTTAAAACTATGGTTTGGGTGTTTTTCTTGCATTCCAGTCTCATGCTACggttatacaatttttattaattgcatttttatgttttgttttgtgaatgtaGCCTCTATCTGAAGCTCTCATCACACACGTGAGGGTTGAGCTCATCTTGTTGCAATACATTTAATCTGGCATTCGTATTTCGTACGTGAAGATCGGGGGCCAATGAGAAGGTCATGCTACCAATGGGAAATCAAATAGCGACGTCTTTTCAAACTCATCTATTACCATTGTCTTCTGATAACACATCCAAGAGTATGATTTAAATACGATCGGCTAATTAAGCATAATAACACATGTAGCATTATCTCTGTGAATGGAGTTAGACGTCAGTAGAGAAAGTACAATAAGAAAGTCAGTAGATTCCCATTTGAAGCACTGAAAGTTCACCAGATCTTACTGCCACATGCCCTTCTAGCTACTATTGCTGCgttatactttaaatattgaGAGTACAGGGGTGAACCTCAAAAAAACAGCCAGGACATTTCATTATAAACTATTTAGGGAAAAAATAGATATGTGGTAGGATATGGAAATCAAGCttacaatttgtattattattattattttgacattttgtgactgttattattattttcatgtttcatttcaATGACTGCCACTTctgtaatacagtaaaaattaacaTAATACAATAACCTAGTGTAACAAAGCACTAGTTAAAGGCATGAAACACTACCATGCagattgctatttttgtttttttggcattaATGGGAACGTGGGAGTACAATGTACTTGTACATTTCAAACCTCATTTAACGATTTTTATTGATTCAcctgtgcatttaataaaatacaaaaaaatcccTTGAGCAAACCCGAAGATCCGTGAAAGGCACGCTGAAGAGCGTTGATTCGATCAGATCCGATCGGCTGTTCTGCCGTATGCAAAGCGTTCAGACCAGAGAGAGAGTTTCTGTTACTGTTTTTCcgtttatgtgttttatttgtttgtttgtttttagatatACCGGTGCACAAGTGAGAGAGCAACTTGTAGTGCTGGATGTTGTATATTCTCTGTCATGTAATGAACTATTTTagaggaaaaatatatttgaaatatgactccaagatgtataaataaataaccacgAAAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139854 lncRNA downstream 182870 17022103 ~ 17030063 (-) True G94516
TU139834 lncRNA downstream 197276 16984506 ~ 17015657 (-) True G94511
TU139837 lncRNA downstream 220849 16984506 ~ 16992084 (-) False G94511
TU139762 lncRNA downstream 618202 16593425 ~ 16594731 (-) True G94455
TU139759 lncRNA downstream 643683 16567915 ~ 16569250 (-) True G94453
TU139972 lncRNA upstream 8901 17374750 ~ 17376237 (-) False LOC122356193
XR_006252401.1 lncRNA upstream 266400 17632249 ~ 17672523 (-) True LOC122356952
TU139990 lncRNA upstream 355879 17721728 ~ 17722300 (-) True G94608
TU140004 lncRNA upstream 425035 17790884 ~ 17791890 (-) True G94619
XR_006252405.1 lncRNA upstream 526188 17892037 ~ 17900115 (-) True LOC122356989
XM_043255788.1 mRNA downstream 237444 16964295 ~ 16975489 (-) True fhip2a
XM_043255598.1 mRNA downstream 250454 16923937 ~ 16962479 (-) False ablim1a
XM_043255597.1 mRNA downstream 252704 16923937 ~ 16960229 (-) False ablim1a
XM_043255592.1 mRNA downstream 252704 16923937 ~ 16960229 (-) False ablim1a
XM_043255599.1 mRNA downstream 252995 16923937 ~ 16959938 (-) False ablim1a
XM_043254697.1 mRNA upstream 10144 17375993 ~ 17387006 (-) False LOC122356193
XM_043254696.1 mRNA upstream 10869 17376718 ~ 17387004 (-) True LOC122356193
XM_043254725.1 mRNA upstream 181565 17547414 ~ 17548604 (-) True LOC122356215
XM_043256024.1 mRNA upstream 333088 17698937 ~ 17713567 (-) True zfand3
XM_043256023.1 mRNA upstream 333088 17698937 ~ 17713566 (-) False zfand3
unassigned_transcript_1928 other downstream 765171 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 786398 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 920567 16290154 ~ 16292366 (-) False cisd1
XR_006252286.1 other downstream 1050180 16014317 ~ 16162753 (-) False pcdh15a
unassigned_transcript_1929 other upstream 353258 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1930 other upstream 353785 17719634 ~ 17719706 (-) True trnav-aac_26
TU140311 other upstream 1179732 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 1179732 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 1179732 18545581 ~ 18672893 (-) False LOC122356088

Expression Profile