RNA id: XM_043255967.1


Basic Information

Item Value
RNA id XM_043255967.1
length 1576
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC122356886
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18706349 ~ 18743542 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caatccTTTGGACGTTCTCAGTACGTAGAGCTCTCCTATCCAGCCGTTTTcgatattagtttttatttatgtaattttagtttaacttaTAACTTGAATGCTGTGAATGCGCCATCACTGGTCGCACATAAACAAACTGCCAGCGTTGTCGAGGGAGGCGGGATTTAAAGTGTTACTACTACAGAGTCACAGCTTTGCATGGCATATACTGTAGACGTCGGCGAGACGGATCCCTCGGGAAATGTACTCCATAGTGGAGATCAAAGGGGTAAAATGTGGATATCGCTGTGGCTACTGTGGGACCGCAGGAGGCAAAGCTTCGTACGGCATGTGGTCCCATACTATGTCGGTGCAGGACTACCAAGATCTCATCGACAGAGGCTGGAGAAGaagTGGCAAATATGTTTACAAACCAATTATGAATAAGACATGCTGTCCACAATACACCATCaggTGCCACGCTTTGAACTTCAATCCCTCGAAGACTCACAAAAAGACCTTGAAGAAGGTGAACAGGTTCCTCTCCAAAGGAGAGATGCCGGTAGAGAATGAAGGACATGAAGGTTTGTTGGAAGATATCAAAGGTCGTCTAAAGCCTCTCTCTTCCATACTTCAGCGGACAGTGGCTATAGCTGCAGGAAAAACCCAGTTGTTTTTGTCAGGAGAGCCTATGGACTCTGTGCACGAAGAGGGTGTTCAGCCACCTCCTCAAGACCCTCTGAAAATAGACCGCAGCGAAGTACAGGACATCAGCACCAGCCCAGACACAGACACCGCCAACTCAACTGCACCAACAACGCCCAGAGATGACGCAGAGAAAACTAACGCTAATGTTACACCCAAACCAGGTAAGGGAGCCGATCCCACCAGGCCTTTGTGTCGGAAAGCTAAGGACCTCAGGAAAGAGAGACGACTTCAAAAGGAGCAACAGAAGCAGCAAGAAGCAGCGTCTTCCTCCGTCAATCCCACCCCGACGAAACCTTCATCCAGTCAGCCCAAATCATTGGAGGAATTCATTACCGAGTCGTTACCCAGCGACCCTCTGCACCGTTTAGAGGTGAGGCTAGTGCCGGTCAGCTTTGAGGACCCGGACTTCTCGGCGTCGTACGAGCAGTCAGCAGCGCTGTACACACGCTACCAGATGACCGTTCACGGCGACGCTCCGTACGAGTGCGGGGAGAGCGAGTTCAAGAGGTTCCTCTGTGACTCTCCTTTAGAGGCTGAGACCACTCCCGACGGCCCTGATGTGGGCTACGGCTCGTTTCATCAGCAGTATTGGTTGGATGGCAGAATAGTAGCTGTAGGAGTTGTGGACATCCTTCCCCCTCCTGTGTGTCGTCCGTGTACCTGTACTACCACCCCGACTTCTCCTCGCTCTCATTGGGCACCTACTCTGCTCTCAGGGAGATTGCCTTCACCAGGCAGTTGCAGCAGCAGTCGCCCAAACTGTCCTACTACTATCTGGGTTTCTACGTCCATTCATGTCCCAAGATGCGCTATAAGGTACAGTTTGGGTCTGAGATCAACCCACAGCCTTCATTTCAGTTCATCTCTGCACTGATCAATATCTCCTAAC

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140317 lncRNA downstream 79037 18623483 ~ 18627312 (-) True G94849
XR_006252272.1 lncRNA downstream 144880 18545571 ~ 18561469 (-) False LOC122356088
TU140305 lncRNA downstream 162365 18543652 ~ 18543984 (-) True G94845
TU140303 lncRNA downstream 165649 18540385 ~ 18540700 (-) True G94843
TU140300 lncRNA downstream 250223 18452872 ~ 18456126 (-) True LOC122356994
TU140447 lncRNA upstream 172703 18916245 ~ 18916650 (-) True G94941
TU140438 lncRNA upstream 214176 18957718 ~ 18975499 (-) False LOC122357020
TU140483 lncRNA upstream 335018 19078560 ~ 19078839 (-) True G94961
TU140501 lncRNA upstream 426326 19169868 ~ 19170089 (-) True G94978
TU140529 lncRNA upstream 458301 19201843 ~ 19208269 (-) True G94997
XM_043254551.1 mRNA downstream 121233 18574784 ~ 18585116 (-) True LOC122356087
XM_043255034.1 mRNA downstream 202072 18458198 ~ 18504277 (-) False fgfr2
XM_043255032.1 mRNA downstream 202073 18458198 ~ 18504276 (-) False fgfr2
XM_043255033.1 mRNA downstream 202073 18458198 ~ 18504276 (-) False fgfr2
XM_043255029.1 mRNA downstream 202074 18458198 ~ 18504275 (-) False fgfr2
XM_043255932.1 mRNA upstream 34126 18777668 ~ 18780239 (-) True LOC122356860
XM_043255935.1 mRNA upstream 36833 18780375 ~ 18809580 (-) True slc29a1a
XM_043255934.1 mRNA upstream 36833 18780375 ~ 18803545 (-) False slc29a1a
XM_043255933.1 mRNA upstream 36833 18780375 ~ 18797660 (-) False slc29a1a
XM_043254727.1 mRNA upstream 86726 18830268 ~ 18832948 (-) True LOC122356218
TU140311 other downstream 33456 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 33456 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 33456 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 986643 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 987170 17719107 ~ 17719179 (-) True trnav-cac_10
XR_006252356.1 other upstream 1124471 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 1400054 20143596 ~ 20143727 (-) True LOC122357145
TU141250 other upstream 1736383 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 1737901 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 1745243 20488785 ~ 20492076 (-) True G95510

Expression Profile