RNA id: XM_043256000.1


Basic Information

Item Value
RNA id XM_043256000.1
length 1825
RNA type mRNA
GC content 0.41
exon number 4
gene id pla2g12b
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23324782 ~ 23329933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCACTATCAACAGAGGCTGTGTGTGCTGTTCACTCTTTTCTATCTAAGCCCTTCGGCTTTATCGGTCTCTCCTTCTTCTTGGACCCTACAGACCTCCCGGGACCCGGGGCCAAATCATGTTTCCTCGTGTGCTTCCTCTGCTGCTGCTCTGTATCTCCACAGGCTTGGCTGCCACGCTCATCCAGGCCTCTGCTGATGCAGCTGCGGTGGATTCTCCAGCTGACGGCTCCGTTCTGCCTGAAGCTCAGGCTGGTGAAACCCCAGATGACATCCTGATGGCAGATGCCCCTGTTGAGAGACAACCTGCAGAGACCCAGAGCTCCACGCAAGAATCTGAAGATGATTCAAGCTGGGGCTTGGGTTCTATCAGAGGGAGTTTCCAGGCAGTCAATGGCTATTTTGACTCTATACTGGAGGTGATGGGGGGTCGAGACGGTGTATGCCAGTACCGCTGTAGATATGGTAAAGCTCCTCAACCTCGTCCTGGATATCAAATGCCCGAGCCTGACGGTTGTAGCACCTCGTTGCTGGGCTTCCAGGTACCTAACAGTTTTGATATGGGCGTCCCAGCCATGACCAAATGTTGTAATCAGCTAGACATTTGCTATGACACCTGTGGTTCTAACAAATACCGCTGTGACACCAAATTCCGCTGGTGCCTCCATAGCATCTGCGGTGACCTGAAGAAGAGTCTGGGCCTCATAGCAAAAGTTGAAgCCTGTGAGACCTTTGCGGACACCATGTATAACACCGTGTGGACTTTGGGCTGCAGGCCCTTCATGAATGGCCAGAGGGCATCCTGCTATTGTGAAGGAGAAGAGAAGGACGAGCTGTGAAGATCTacaaaccacaaaaacacaccaccttaaacacatataaacactTTTGTAGTTTAAACTACTCCGCACTAGGGCTCAGTATTAGGATGAAGTAAGACACCCTGGTCACATTTCACCACATTGAAAAAGAAACTGTTAGAAAGATTTACCGCAGTGTACAACGGTGGTGGTTGTTGTTGGATTCTCATTAGTTAatatagttaatttatttatcatcattatttttatttgaaataattgtaattgttatCAGCATACGTTAAATGCTGTAAATGACCTACTACTGCAATGTATAAATACTATTGATTTACatttactaatttaaataaaatatttatttgctttgcagcaaaagttttttttaaataaacattttgcataaatagTCTGATCTTCCTAAAAATGTCACAAAGATTCACCCACTAACTCTCAAACTGGTGCTAGTGAATTTGTTTTAGTTCAGCAGAAACTTAAGGTTTACTCTGTATGTGTGAAAGTGTCATATTATGATTTGGGTAGTgatatttatgcaaataatgATTGTCTGAATATCACGTTCTGAAAACTCAAACGTTCTCCTAAGCAAGTAGTTTTATTggattttgtttgaaatgtaattatatgCAGAATAGAAGGTAAACAGTAATACACATGAATATGTATttcactgagagagagacaacatGACTACAGACTGTgacaaaaataactgtattggctgtaaaataattttattctacTCAGTAAAACAGTGCTGAGATTATACagaaattaagcattttaaaactgtataatGCTGCTCAGTTTCTTGATCTAAGCTTTTTTGAAACACCTAGAGGCTTTAtgtagtaaatatatatgtcaGAAGTATTGGAAGGAAGCAACTGTtgcaaattataaatgtaagatTCCTGCAGATACTGTATGCAGAATGGATgtgtttaaatacaataaagtagCCTGTAGATGGCGTTGTGGGTAGGA

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142128 lncRNA downstream 146686 23176802 ~ 23178096 (-) True G96117
TU142099 lncRNA downstream 170287 23152205 ~ 23154495 (-) True G96108
TU142100 lncRNA downstream 170287 23152205 ~ 23154495 (-) False G96108
TU142019 lncRNA downstream 294882 23017198 ~ 23029900 (-) True G96061
TU142018 lncRNA downstream 317319 23006279 ~ 23007463 (-) True G96060
TU142211 lncRNA upstream 109344 23439277 ~ 23443783 (-) False si:ch211-130h14.4
TU142295 lncRNA upstream 208845 23538778 ~ 23542300 (-) True G96254
TU142315 lncRNA upstream 597398 23927331 ~ 23928060 (-) True G96265
TU142336 lncRNA upstream 712595 24042528 ~ 24067735 (-) True G96279
TU142347 lncRNA upstream 740227 24070160 ~ 24070488 (-) True G96286
XM_043254695.1 mRNA downstream 86265 23183915 ~ 23238517 (-) False micu1
XM_043254694.1 mRNA downstream 86265 23183915 ~ 23238517 (-) False micu1
XM_043254693.1 mRNA downstream 86265 23183915 ~ 23238517 (-) False micu1
XM_043254692.1 mRNA downstream 86265 23183915 ~ 23238517 (-) True micu1
XM_043254878.1 mRNA downstream 155879 23167873 ~ 23168903 (-) False mrps6
XM_043255473.1 mRNA upstream 2887 23332820 ~ 23416851 (-) False pde10a
XM_043255478.1 mRNA upstream 2887 23332820 ~ 23416844 (-) False pde10a
XM_043255472.1 mRNA upstream 2887 23332820 ~ 23416244 (-) False pde10a
XM_043255476.1 mRNA upstream 2887 23332820 ~ 23416239 (-) False pde10a
XM_043255475.1 mRNA upstream 2887 23332820 ~ 23416212 (-) False pde10a
TU142010 other downstream 329183 22994663 ~ 22995599 (-) True G96053
TU141976 other downstream 501523 22821981 ~ 22823259 (-) True G96036
TU141977 other downstream 502268 22821981 ~ 22822514 (-) False G96036
TU141882 other downstream 881496 22379092 ~ 22443286 (-) False LOC122356262
XR_006252429.1 other upstream 940381 24270314 ~ 24270449 (-) True LOC122357144
TU142459 other upstream 1012928 24342861 ~ 24344630 (-) False borcs7
TU142467 other upstream 1069190 24399123 ~ 24403644 (-) False fgf8a

Expression Profile