RNA id: XM_043256110.1


Basic Information

Item Value
RNA id XM_043256110.1
length 1044
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC122356970
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20542775 ~ 20546992 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCTGATGAAGAAGATGATTACATGTCTGACGCCTTCCTGAACCAAATCCCAGATGTCCGGCCCGGCGTCCCGATGGTGAAGCGCGTGAAGGAAGCCATGAAAAAAGAGGCCCTGCAGAAAGAGAAGAACGCCCAGAACCGGCAGAAGAGCTACAAAGAGCAGGAGCGAGAGAGTCGGGAGAGCGCTCTTCAGAGCTCCTTGAGCAGCCAAAACAAAGGCTTTGCGTTGCTGCAGAAGATGGGATACAAAGCAGGACAAGGCCTGGGAAAAGAGGGTGCCGGACGGGTCGAGCCGGTTCCTCTGAACATCAAAACAGACAGAGGCGGCATTGGGATGGAGGAGGTCAGGAAGAGGAAAGCCGACGAGGAGCTGCAGAGTTACAGGAGAAAAGCGCAGCTGACGCAGCAGGTGGAGAAGAAGTCATTAGAGGACTTCAGAGTGCGTAAGAGGAGCGAGAGAGAAGAGCGTCAGATACAGGGCGACCTGAGGAAGAGCCAGCGGGCCTGTGAGCAGCTCGACAGCCAGAAGGGCGTCGCTGTTCCCAGAGACAGCTGGTACTGGCCTGAAGATGTGAAAGACGAAGAGGCGGAGCTTCTGGAGGAGGAAACCAAACCGGAGGGAAGTGACGACGAGGAGGAACTAACACCTTTAGACAAGCTGCAGTTTCTCACCTCGTATCTGCGAGGAGTCCACTTTTACTGCATATGGTGTGGGACGGCTTTTAATGACGAGGAGGATTTGAGCTCAAACTGTCCCGGAGACACGGCAGCGGATCACGACGACTAGAACCACCTGCAGTTATCCGGAACacttgcatttctttttttttttgtgttcgatatttattcattcattaaacaacacATTGATATTTTGATTATAATCGGTGCGTGGTCGTGTTGATTCATCACTTTGCATGTTTCCGAATCTCAGCCACTCACAAACGTTTATTAAGGACTCTGTAAAAATACTatgatatttgtttttatttctccagTGAGCCTAAAGCAATCAAAGATTAAAAATTTGCTTTGTACGTAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141256 lncRNA downstream 22682 20518600 ~ 20520093 (-) True G95524
TU141247 lncRNA downstream 27464 20514773 ~ 20515311 (-) True G95519
TU141232 lncRNA downstream 267519 20264726 ~ 20275256 (-) False LOC122356211
TU141230 lncRNA downstream 304548 20236678 ~ 20238227 (-) True G95506
TU141210 lncRNA downstream 402089 20114726 ~ 20140686 (-) False LOC122356209
TU141285 lncRNA upstream 73055 20620047 ~ 20620719 (-) True G95537
TU141279 lncRNA upstream 74270 20621262 ~ 20623143 (-) True G95535
TU141282 lncRNA upstream 74270 20621262 ~ 20678269 (-) False G95535
TU141283 lncRNA upstream 74270 20621262 ~ 20623230 (-) False G95535
TU141307 lncRNA upstream 281786 20828778 ~ 20829053 (-) True G95549
XM_043254780.1 mRNA downstream 140 20521647 ~ 20542635 (-) True eif2ak2
XM_043256235.1 mRNA downstream 40127 20347147 ~ 20502648 (-) True nid1a
XM_043254721.1 mRNA downstream 197093 20275777 ~ 20345682 (-) True lyst
XM_043254718.1 mRNA downstream 267389 20264785 ~ 20275386 (-) False LOC122356211
XM_043255695.1 mRNA upstream 25328 20572320 ~ 20595986 (-) False mypn
XM_043255694.1 mRNA upstream 25328 20572320 ~ 20595986 (-) True mypn
XM_043255696.1 mRNA upstream 28586 20575578 ~ 20595989 (-) False mypn
XM_043256163.1 mRNA upstream 51732 20598724 ~ 20606506 (-) True cacul1
XM_043255900.1 mRNA upstream 60265 20607257 ~ 20616412 (-) True sirt1
TU141237 other downstream 45911 20493642 ~ 20496864 (-) True G95511
TU141235 other downstream 50699 20488785 ~ 20492076 (-) True G95510
TU141250 other downstream 56071 20479925 ~ 20486704 (-) True G95520
TU141252 other downstream 56071 20481443 ~ 20486704 (-) False G95520
XR_006252430.1 other downstream 399048 20143596 ~ 20143727 (-) True LOC122357145
TU141260 other upstream 23046 20570038 ~ 20571562 (-) True G95526
TU141433 other upstream 460480 21007472 ~ 21180217 (-) True G95646
unassigned_transcript_1931 other upstream 866808 21413800 ~ 21413871 (-) True trnag-gcc_70
unassigned_transcript_1932 other upstream 1027259 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1933 other upstream 1106620 21653612 ~ 21653681 (-) True trnag-gcc_72

Expression Profile