RNA id: XM_043256235.1


Basic Information

Item Value
RNA id XM_043256235.1
length 4026
RNA type mRNA
GC content 0.58
exon number 22
gene id nid1a
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20347147 ~ 20502648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATATTAATAGTTGACTTCCGGTCGGAGCCGCGAGGGTGTCCTGGAAGCGCTGTCCTGAAGCTGCGGTCCTGAGATTGCGGCGCAGAAACACGCTGCTGCTTAAAAACGGGCTTTCCCCTCAGCGAGTCAGTCAGTGAGTCTAAGGCGGCTTCAGACACGGTTCCGGACTGGAAATGGGTCGGCAGGGGCAGAGATGGCCGGTGTGGAGCTTACTCCTGGGACTGTCGGTGTGTGTCAGCGGGATAAAGCGACAAGAACTTTTTCCGTTCGGGAGAAGCGCAGGAGACCAGTCCCTCGAAGCGGGCAACGATAAAACTCGGGAGATCACGCCGGACAAGCCCGTGACATTTTACGACGGGCAGTTCAGCAAGATTTACATCAACACCAACGGCTTCGTTGCTCTGGAGGCGCCGACGGCAGAGTCTGAGTATCTGGGGAACATGCCGGCTGGTTTCGGGATGATCGCAGCTCTTCAGGGCGACCTGGACACCAGCGACGGAGTGGGAAAGGTGTTCTTCCGCCAGGACTCCAGTCCAGCTCTTCTCCAGCAGGCGGCCGATCACATCAACAGAGCCTTCCCCGAGGATGACGTGGTGAACCCCATCAGCGCGGTGGTGGTCACGTGGGTGGATGTGGCGTCCCATCGGGCTGAGAGCAGAGGGGACGGACTGGAGTCCACCGGAAGAAGAAATACGTTTCAGCTGGTCATTGCTTCTCTGGAGACCATGTCTTATGCGATTCTTCTGTACCCGAGAGAAGCGATGCAGTTCCAGAGCACCGGCAGCTACACGATGCACGCCGGCTTCAGTAAAGGACATATAAGCAGGAAGCAGGGGCCGTACTACCGCATCACAGACGACACCGAGCTGTCTGTCAGGAGCTTAGCTGAGCAGACCAACTCCGGGAAGCGTGGCGTGTGGGTTTACGAGATAGGAACGCCTCACTTCACGGACGTCGCTCCCGGAGAAGTGCCGGACCTGCCTCCGGACTCCCACCGGCATCAGACCGCAAGGAACCACCACCATCAGCGGCCGCTGTACCCCGACGTCCGGCGGGAGAGCCTGGGCGGAGTCTACGACCGGCCGGAGCATCCTCCACCCGTCCCGGTGCAGGCGGTCCAGTACAGACCCGAGCGGCCGGCGGTCGTGGAAATCGAAAACGGAGACGGAGACAACATCGAGGTCGACGTGTTTACGTACAGCTCTGGTGAATGTGATGGACGGAAATGCTCTAAATTTGGGGAATGCCGGAGTCATCCGAGCGGACGATGCTGTCAGTGTAAACCTGGATACTACGGGAACGGCGTGCAGTGCGTCCCTGATGGTATTCCTCAGAGGATGAACGGTAAAGTGAGCGGCAGGGTGATCGTGGGAAGCTCTCCGCTGCCCGTGGATTTCGCCAGTAACGATCTCCACTCGTACGTGGTGGTGAACGACGGCAGAGCGTACGTGGCCATCAGCGCCATTCCCCCGATCGTCGGCTTCTCTCTGCAGCCGCTGTCGTCCGTCGGGGGGATCATCGGCTGGGCCTTCGCCCTTCAGCGGCCGGGCTTCAAGAACGGCTTCAGCGTCATCGGCGGAGTGTTCAAACGTCAGGCCGACGTGACCTTCCAGCCAGGTGGAGAAAGGCTGACCATCTCTCAGGAGTTCAAAGGCATTGATGAGCACGACCACCTGATGGTTGACACCAGACTTGAAGGAAAGATTCCTGAGGTTCCTCAGGGAGCCACAGTTCAGATTGCCTACACAGAGATCTACCAGTACAGCACCAACTTGATTTCTGCTTCATCCACCCGGGAGTACGTGATCAATCTGCGGGACCGTTCAACCCAAAGCAGAAGCTACAATTTAAGAGAGACCATCACGTTTCAGGGCTGCCACCTCGATGAAGTGGTCAGAGCCACACAGATGCTCAGCGTCGACCAGGTCTTCGTCATGTATGACACGAGCGAACAGCTCTTGCGTTACGCCACGAGTAACAAGATCGGTGACGTCAACGGTGGACAAACGGAGGAAAACGCCTGCTTCACCGGCAGACACGGCTGTGACACCAACGCCGTCTGCAGACCCGGCCAAGGAAACCAGTTCACGTGTGAATGTGCCACGGGCTTCACCGGAGACGGACACGCTTGCGCTGACGTCGATGAATGCAGGGACACTCCTCAGATCTGCGGGCCGAACGCCATCTGTAATAACCAGCCGGGGACGTTTCGCTGCGAGTGCCAGGACGGCTTCCAGTTCGCCGGCGACGGACAGACGTGTGTCGAGGTGCAGCGTCCCGTGGACCCGTGTCGCTTGGGCACCCATGACTGTGACGTCCCCGAGCGCGCTCGCTGCAGCTACACCGGAGCATCGTCCTACATCTGCAGCTGCCTGCCCGGCTTCATGGGAGACGGACGCAGCTGTCAGGACATAGATGAGTGTCAGGTGAATCAGTGTCATGACGATGCCGtctgcctcaacacacctggaTCTTTCACCTGTCAGTGTAACCCTGGTTTCTATGGCGATGGTTTCTCCTGCTCTACAGAGTATGAGAAGACGCGCTGCCAGCTGCATAGAGAGAGCGCTCTGGGAGCCGGGCCCCGCGGCCCCCGACCCGGTCAGTATGTGCCGACGTGTGACGCCCAGGGAGGGTACGACCCCATGCAGTGTCACGCCAGCATCGGGCAGTGCTGGTGCGTCGACCGTGACGGCCAGGAGATCGCTGGGACACAAACAGGACCCGGACGCTTTCCCGAGTGTCCTGGTCACGATGTCCCTCGCCCGATTGGACCAACGCCCGATCCTAACGTGAATCCTTTGCCTCCTGGCAGTCATATCCTCTTCGTCCAGAGCGGGAAGATCGAGTATATTCCTCTGGAAGGTCACAAACTGAAGAAGAACCAAGCCAAGACTGTACTGCATCTCCCGGAGAAAGTGGTGATCGGAATTGCTTATGACTGCGTGGAGAAGATGGTGTATTGGACGGACATCAGCACACCTGCCATTAGCAAAGCTAGTCTACAGGGAGGAGAACCTGTCCACATCGTCAAATCAGATCTCAGCAGCCCTGAAGGCATCGCCATCGACCATCTGGGCCGAAACGTGTTCTGGACCGACTCCGTCAAGGACAGGATCGAGGTTTCTTCTTTGGACGGATCCCAGCGCCGCGTCTTGATTAACACAGACCTGGTTAACCCGAGGGCCATCCTGGCCGATCCCACCAACGGCTACATTTACTGGGCCGACTGGAACAGGGACGCCCCCAAAATCGAGATGGCTTACATGGACGGCAGAAACCGCAGGGTCCTGGTCAAGGATGACCTGGGCCTCCCCAACGGTTTAACTCACGACCCCCAGACGTCTCTGCTGTGCTGGGCGGACGCTGGTACACATAAACTGGAGTGCATGAATCCACAGCAGGGCGGTCGGAGGCAGCTTATGGAGGGGATTCAGTATCCCTTCGGACTGACTACTGATGGAAAGAACCTCTACTACACAGACTGGACGAGGGGAGCGGTAGTCGTCGCTGATCGATATGCTCGTCGAGAAGTGGACGAGTTCCAGCCCCAGAAGCGAACGCGTCTCTACGGGATCACCGCGGCTCACGCGCACTGCCTGTCCGGTCAGAACCGCTGCTCCGGTGATAACGGCGGCTGCACGCACTTGTGCCTGGCGACGCCCGCTGGACGCTCGTGCCGGTGCCCGGAGAACCCCGCGGGGCTGGACTGCGTGGAGCGGGAAGACTGAGACCGGGGCGGACCCGTGCTGATGGACGGCGCTCCCGCGGCGCCACGTCTCGTCCGAAAGACGCATTAAAGCCGTCTCGGCATTGAAGATTTATAAACGCATCCGTGCCTTAAATACGATCACGGGGCAGTTAACGCCGGTGAGGTCACTGTGAGTTCAGTCTCGTGACTTTCCCCCCAAATCGTTTTCATGCAAAACTTAACAGCGGTCGCCCCgatacttttaaaagaaagaaatgcctGGCATAAATCGATGTTTACACACGCATCTCTTCAATAAAATCGTATTTTGTTTA

Function

GO: NA

KEGG:

id description
K06826 NID; nidogen (entactin)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU141232 lncRNA downstream 71891 20264726 ~ 20275256 (-) False LOC122356211
TU141230 lncRNA downstream 108920 20236678 ~ 20238227 (-) True G95506
XR_006252294.1 lncRNA downstream 206189 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA downstream 206461 20114726 ~ 20140686 (-) False LOC122356209
TU141188 lncRNA downstream 271210 20075371 ~ 20075937 (-) True G95469
TU141247 lncRNA upstream 12125 20514773 ~ 20515311 (-) True G95519
TU141256 lncRNA upstream 15952 20518600 ~ 20520093 (-) True G95524
TU141285 lncRNA upstream 117399 20620047 ~ 20620719 (-) True G95537
TU141279 lncRNA upstream 118614 20621262 ~ 20623143 (-) True G95535
TU141282 lncRNA upstream 118614 20621262 ~ 20678269 (-) False G95535
XM_043254721.1 mRNA downstream 1465 20275777 ~ 20345682 (-) True lyst
XM_043254718.1 mRNA downstream 71761 20264785 ~ 20275386 (-) False LOC122356211
XM_043254719.1 mRNA downstream 72116 20264785 ~ 20275031 (-) True LOC122356211
XM_043254720.1 mRNA downstream 72458 20264785 ~ 20274689 (-) False LOC122356211
XM_043256232.1 mRNA downstream 82894 20245487 ~ 20264253 (-) False b3galnt2
XM_043254780.1 mRNA upstream 18999 20521647 ~ 20542635 (-) True eif2ak2
XM_043256110.1 mRNA upstream 40127 20542775 ~ 20546992 (-) True LOC122356970
XM_043255695.1 mRNA upstream 69672 20572320 ~ 20595986 (-) False mypn
XM_043255694.1 mRNA upstream 69672 20572320 ~ 20595986 (-) True mypn
XM_043255696.1 mRNA upstream 72930 20575578 ~ 20595989 (-) False mypn
XR_006252430.1 other downstream 203420 20143596 ~ 20143727 (-) True LOC122357145
XR_006252356.1 other downstream 440085 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1674254 18545581 ~ 18672893 (-) True LOC122356088
TU141260 other upstream 67390 20570038 ~ 20571562 (-) True G95526
TU141433 other upstream 504824 21007472 ~ 21180217 (-) True G95646
unassigned_transcript_1931 other upstream 911152 21413800 ~ 21413871 (-) True trnag-gcc_70
unassigned_transcript_1932 other upstream 1071603 21574251 ~ 21574321 (-) True trnag-gcc_71
unassigned_transcript_1933 other upstream 1150964 21653612 ~ 21653681 (-) True trnag-gcc_72

Expression Profile