RNA id: XR_006252304.1


Basic Information

Item Value
RNA id XR_006252304.1
length 2085
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id LOC122356279
representative False

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17903197 ~ 17910716 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCACTTACCGACGGCAGCGTACGGCAAAGGACTTGAGGGTTTTTTTGAGGATGTAGCGTCGGTTTGAATGATAGGCTTTCTAGAAGATTACAGGCTTGGATTGTCGCTAAGAGTGAACCGCTTCTTTCTTTGACAGAAATGGTCTGCGGAGAGGAAAGGAGAGGTGAAAACCCAAAGCGACACGGAATGTGAAAAAGAGGGAAGGAGAGCTTGTAATTCCCGTCGGGTTTCAATGCGGTCCAAAAAAACGGAGACAAAGGTGGTCTGTGGAAGACTGAGCGGTGACCCCGGCAGCGAAGATCATTTACATAATGGTGAAGACGTTTTGGAAGAAAGctCTCAGCGCAGAAAAGATGATCACGGTTTGATCTTAAGATGTCTTGATTGATATCAGCAGCCTGTGAGAGAGCAGTACTCCTGCCCACGACCGGACAGCATGCGGGGCATCGCTGCCAAAACACGGTGGTCTGCTCTAGTCTGATCGGGGGAACGGGACGCTTGCATGCAAATCAGCTTGGCAGAGGCCTGCGTCTGACCACAAGACCATAAGGAAACCGCCACTCACCGATGCAAGCACAAAGGCAGGGGTCGTGACTGGTCACCCGTCCAGACGGACCTGACGTCCAGCCCGTACGCTCACACATCCCTGCACAGCTGGGCCCATTTCCCTGGAagcttgacctttgacccctgaCCTTGAACTTGAGCCTGGCCTCATTTTCCGAGCGCGGTCTGACCGCCGCGTGACACCGCAGATGACCCTCTCCGGGTTTTCGGAAAGGGTGCAGTGGGTTTTCCTCATTGTGCTCCAGTCACCTCTGGTTTGATTTCTGCCGTACCCGGCGTGAGCGGCACCGTCTCGTACCCTCATCAGGACTCTGCCAGAGCCGCAGCTGGTTCGTATCGACGGTGTAATCGTCTCCAGAAGCCGTTTTACTCCAGATTTAACAGCTCTAACGTATTTTTCACATCACTGACATGCATGCCCTCACCGACAGAAAAAAAGCCAGCGCTTTTGATCAAATTCGCACCACATGCATCTCCTAGAAGATGAGTTTGAGACCGCGTGGAAGTGTGTTCTCTCCCTGTTTTGATCGGGGCCTTCTCTTCTCTCGTGCGCCAGAGCTTCTTGTGTGTATGTGCCGTGAGTTCGTTCCAGAGTCTTGCGGTGAGCCTGCACCAGAAAAAAATGGGTCTTTCTGGATCTCCCGTCGGTGACAGAAGAAGGATGAGCTACGGGCTCGGAGGACATTTATCTCTGACGCTGAGCAGAGTCGCCACATGGACACGTTTAGTGGCTACGGACAATAGCTGAGCCGCAAATTTCTCTCTCTGCGTCTGTCTAAACACAAACTGATCCATATGGAAAGATTTCTGCTGAAGTTTGTACCGAAGCGCACTGGTGTCGTACTGCAAACCTCCCCcgtttgcaaaaaaagaaagaaaaggcaaTCAATGCCTGGTATCAACTATCTCGTTGCTGAGACGGGCTAAATGAACCGTTGGCAGTTAGAGGATGGCGTTCGCAATCAAGACCCGAACCGGTTTCTAACAAAGCAAAACCAGCGGAAAAGACTGTGCAATCAACAGAAATAAACCTAAAGCCCCGTGAATGTCCGTATCAATGGGAACGCTGGAGAACAATGGCTGTAATGAAGCCAGAGAGCTCAGGTCTAGCCGAGTGTTGCCGAACATCAGACGAGGTCTTCAGAAATAAATCTGCGTCTTAAAGGATCAGTGATCATGGCGATGGGAGTTGATTTCTCTTTGGCTTTTTGAGGTTGAAAACGTCACGATTTACTCAGTTTGATGCAGCTCTGTAGAAAGCACAAGCGCTTCTCTTctttaaaatgagtaaatacaATTAGTTAGAAacgctaaataaaatgaaaacgttATACACGctgaataaaaagctaaaacctgaaattaattattcttaataattattaattaagaaattatgtaaaatatattacgaTTATTCATGTCAAATATTATGATAacaattatagtaataataattaaatcgatgaggaaaaactaaaaacattttagtaggtttattttaaaatgaaaactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252405.1 lncRNA downstream 3082 17892037 ~ 17900115 (-) True LOC122356989
TU140004 lncRNA downstream 111307 17790884 ~ 17791890 (-) True G94619
TU139990 lncRNA downstream 180897 17721728 ~ 17722300 (-) True G94608
XR_006252401.1 lncRNA downstream 230674 17632249 ~ 17672523 (-) True LOC122356952
TU139972 lncRNA downstream 526960 17374750 ~ 17376237 (-) False LOC122356193
TU140056 lncRNA upstream 29687 17940403 ~ 17994249 (-) True G94663
TU140073 lncRNA upstream 59497 17970213 ~ 17970976 (-) True G94672
TU140117 lncRNA upstream 196714 18107430 ~ 18107801 (-) True G94709
TU140119 lncRNA upstream 197122 18107838 ~ 18108189 (-) True G94711
TU140122 lncRNA upstream 200974 18111690 ~ 18113621 (-) True G94713
XM_043255705.1 mRNA downstream 49824 17800984 ~ 17853373 (-) False runx3
XM_043255706.1 mRNA downstream 50011 17800984 ~ 17853186 (-) True runx3
XM_043255644.1 mRNA downstream 115066 17776719 ~ 17788131 (-) True chp1
XM_043255629.1 mRNA downstream 129346 17769381 ~ 17773851 (-) True khdrbs1a
XM_043255024.1 mRNA downstream 137937 17752801 ~ 17765260 (-) True LOC122356377
XM_043255014.1 mRNA upstream 49321 17960037 ~ 17964870 (-) False rsrp1
XM_043255015.1 mRNA upstream 50243 17960959 ~ 17964870 (-) True rsrp1
XM_043255013.1 mRNA upstream 62160 17972876 ~ 17980109 (-) True rhd
XM_043254799.1 mRNA upstream 163015 18073731 ~ 18080606 (-) False fndc5a
XM_043254801.1 mRNA upstream 163015 18073731 ~ 18080606 (-) False fndc5a
unassigned_transcript_1930 other downstream 183491 17719634 ~ 17719706 (-) True trnav-aac_26
unassigned_transcript_1929 other downstream 184018 17719107 ~ 17719179 (-) True trnav-cac_10
unassigned_transcript_1928 other downstream 1455435 16447691 ~ 16447762 (-) True trnah-gug_23
TU139697 other downstream 1476662 16425697 ~ 16426535 (-) True G94412
TU139489 other downstream 1610831 16290154 ~ 16292366 (-) False cisd1
TU140311 other upstream 634865 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other upstream 634865 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other upstream 634865 18545581 ~ 18672893 (-) False LOC122356088
XR_006252356.1 other upstream 1957297 19868013 ~ 19907062 (-) False disc1
XR_006252430.1 other upstream 2232880 20143596 ~ 20143727 (-) True LOC122357145

Expression Profile