RNA id: XR_006252430.1


Basic Information

Item Value
RNA id XR_006252430.1
length 132
RNA type snoRNA
GC content 0.46
exon number 1
gene id LOC122357145
representative True

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20143596 ~ 20143727 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCATTCTCTAAAACCCCCCGCTAGCTGCTTGTAGCTTCTGGGATAAGCACGAATGCAAGAGAAAACCCGAGAACTTTCCAAAGCTACGTGTCTTCACTGTGACTACTAGCTATTTCACGTCTTGAACACT

Function

GO:

id name namespace
GO:0017053 transcription repressor complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252294.1 lncRNA downstream 2638 20108191 ~ 20140958 (-) True LOC122356209
TU141210 lncRNA downstream 2910 20114726 ~ 20140686 (-) False LOC122356209
TU141188 lncRNA downstream 67659 20075371 ~ 20075937 (-) True G95469
TU141149 lncRNA downstream 221956 19921002 ~ 19921640 (-) False LOC122357123
TU140781 lncRNA downstream 297062 19846301 ~ 19846534 (-) True G95190
TU141230 lncRNA upstream 92951 20236678 ~ 20238227 (-) True G95506
TU141232 lncRNA upstream 120999 20264726 ~ 20275256 (-) False LOC122356211
TU141247 lncRNA upstream 371046 20514773 ~ 20515311 (-) True G95519
TU141256 lncRNA upstream 374873 20518600 ~ 20520093 (-) True G95524
TU141285 lncRNA upstream 476320 20620047 ~ 20620719 (-) True G95537
XM_043255693.1 mRNA downstream 39724 20101059 ~ 20103872 (-) True irf2bp2a
XM_043255837.1 mRNA downstream 107123 20025669 ~ 20036473 (-) True LOC122356780
XM_043255838.1 mRNA downstream 107123 20027304 ~ 20036473 (-) False LOC122356780
XM_043255834.1 mRNA downstream 107123 20027304 ~ 20036473 (-) False LOC122356780
XM_043255839.1 mRNA downstream 107123 20028487 ~ 20036473 (-) False LOC122356780
XM_043255557.1 mRNA upstream 6731 20150458 ~ 20218900 (-) True arid4b
XM_043256232.1 mRNA upstream 101760 20245487 ~ 20264253 (-) False b3galnt2
XM_043256231.1 mRNA upstream 101760 20245487 ~ 20264250 (-) True b3galnt2
XM_043254718.1 mRNA upstream 121058 20264785 ~ 20275386 (-) False LOC122356211
XM_043254719.1 mRNA upstream 121058 20264785 ~ 20275031 (-) True LOC122356211
XR_006252356.1 other downstream 236534 19868013 ~ 19907062 (-) False disc1
TU140311 other downstream 1470703 18545581 ~ 18672893 (-) True LOC122356088
TU140313 other downstream 1470703 18545581 ~ 18672893 (-) False LOC122356088
TU140314 other downstream 1470703 18545581 ~ 18672893 (-) False LOC122356088
unassigned_transcript_1930 other downstream 2423890 17719634 ~ 17719706 (-) True trnav-aac_26
TU141250 other upstream 336198 20479925 ~ 20486704 (-) True G95520
TU141252 other upstream 337716 20481443 ~ 20486704 (-) False G95520
TU141235 other upstream 345058 20488785 ~ 20492076 (-) True G95510
TU141237 other upstream 349915 20493642 ~ 20496864 (-) True G95511
TU141260 other upstream 426311 20570038 ~ 20571562 (-) True G95526

Expression Profile