RNA id: TU152493


Basic Information

Item Value
RNA id TU152493
length 1375
RNA type TUCP
GC content 0.41
exon number 2
gene id G103183
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 2207347 ~ 2291926 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTATGGCTGAGGGATCAGGCTTTCATGACACAATGGGACTGTGGTTTGAAGTTTATTTATCTTCTTTCTTCACTTCAAATAGTCCTCTCACCGGAACAACAGGCATATCTTtcctctttgtttttattcccaTATATCTTAAGTAGTCTGTTTACGTCCCCACTCTCAAAAagtgaaaacattcatttttcacCTAACGCGATTAAACACCGGAACGATTCGGCTTTTCGGGCCTACGAGAGGAGAAAACGTCTGagattaaaaacagaaacttcACTTAATATGCAAATGCCCGGAGCTGTTGATCTTAGCTGTGTTTGGATGATCTTGCTTGTGTGTTCAGTCTACTGTCACGTCTTCGCTGTCATTTACAGCCGCGAGGCTCCAGACAGATCCATCTCGGAGACCACATGCGGTGAGAAACATCCAGTATCTGTCTCATCGCTTGGCTGGAACATATGGCCGCTCTAGAGGCCAAATCCGCGTTGATGCATTTTCTTTTGTCAGGGCCGAGCTAAAAATAAATCGGTTGTGACATATTTAGATCGATATTGATAGCCGCTCATTTAGGTTTCGATGGGAGATTGATTGCGGCGTTTGCTTAAACGGGACGCGGATGGAGGTCTTTGTCTAGGTTGAAGGTGGTCTCAATAGCAGAACAGGGACGGGGTCGAGTCGCTGGCAGACATGTTGTCTAATCCCGGCTGCTTTCATGGTCTCTCAAGCTTTCCAGAGCTTGGCGGCACCGTTTGCTGCTCCTGCcaacaaattaacatttatatcaGCTCTTCTCCCGTCCAAAGAGTCCAGAAGCCCAAAGAGAAGACCACCATCATAGATTTGAGAGGATGCCAGCGCTGCTGTTCATTCCTTTTGTTCCTTTATGCATATAAGATCAATGTAATGTTAGATGTCACAATCATCACTTATGAAAGCCCGTTCCCTCAGGTCTTTGAACACTTCAGGCTATAAAAGAACACGCCGGGTTGAGTGTAAAGTAAACTCAGTACACAACAACTGTGCCATAATGTTGATTATcacataacatttttagattatgccttttattttcagtgcattCGCTCTGTAGCTAAAGTAAAGGGACAGTTCCACAATGTATTTGTGTAGCAACTGCAATACAATATTCACTATTGgtgaaaaaatgcataaatataatttacaatacCACAATACATggaaacatacatatttataagcTAAATCgggtttaaaagtttggggtcagtatttttttgtacttttcttcAGCAACAATGCTAAGAGAAGAAGCAtgtcataacataaaaaataaaaatctttccaagttattttgaactttaaatgAGTGGATagattaggtttaggGATGAATTTG

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152464 lncRNA downstream 73501 2101537 ~ 2133846 (-) True G103155
XR_006252692.1 lncRNA downstream 124082 2080083 ~ 2083265 (-) True LOC122359217
TU152469 lncRNA downstream 124131 2080072 ~ 2083216 (-) False LOC122359217
TU152454 lncRNA downstream 178180 2023242 ~ 2029167 (-) True G103147
TU152446 lncRNA downstream 336998 1867855 ~ 1870349 (-) True G103140
TU152506 lncRNA upstream 169498 2461424 ~ 2462404 (-) True G103196
TU152521 lncRNA upstream 301522 2593448 ~ 2594442 (-) True G103208
TU152533 lncRNA upstream 412227 2704153 ~ 2705023 (-) True G103214
TU152538 lncRNA upstream 413760 2705686 ~ 2706068 (-) True G103215
TU152585 lncRNA upstream 467218 2759144 ~ 2868621 (-) True LOC122359209
XM_043258957.1 mRNA downstream 46078 2148757 ~ 2161269 (-) False scn2b
XM_043258958.1 mRNA downstream 46081 2148757 ~ 2161266 (-) False scn2b
XM_043258959.1 mRNA downstream 46088 2148777 ~ 2161259 (-) False scn2b
XM_043258961.1 mRNA downstream 49370 2138567 ~ 2157977 (-) False scn2b
XM_043258960.1 mRNA downstream 50417 2138567 ~ 2156930 (-) False scn2b
XM_043259507.1 mRNA upstream 381875 2673801 ~ 2675776 (-) True LOC122359207
XM_043259506.1 mRNA upstream 381875 2673801 ~ 2675775 (-) False LOC122359207
XM_043259504.1 mRNA upstream 381881 2673807 ~ 2675765 (-) False LOC122359207
XM_043259508.1 mRNA upstream 382131 2674057 ~ 2675757 (-) False LOC122359207
XM_043259301.1 mRNA upstream 433899 2725825 ~ 2746124 (-) True nek3
XR_006252662.1 other downstream 50417 2138567 ~ 2156930 (-) True scn2b
TU152433 other downstream 361853 1844999 ~ 1845494 (-) True G103130
TU152377 other downstream 417520 1777020 ~ 1789827 (-) True G103094
TU151874 other downstream 2105413 98628 ~ 101934 (-) False LOC122359153
TU152527 other upstream 382148 2674074 ~ 2675712 (-) False LOC122359207
TU152529 other upstream 382148 2674074 ~ 2675825 (-) False LOC122359207
XR_006252687.1 other upstream 427956 2719882 ~ 2746124 (-) False nek3
XR_006252686.1 other upstream 427956 2719882 ~ 2746124 (-) False nek3
TU152584 other upstream 464093 2756019 ~ 2868621 (-) False LOC122359209

Expression Profile