RNA id: TU152767


Basic Information

Item Value
RNA id TU152767
length 2908
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G103404
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 3481163 ~ 3485630 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTTCCAAGCTTCCCTTAATGGTAAAAGGTAAACATATCTTggaattttctgaaaatatatcttaatgatactgtgaaatattattacaatttaaataaaacttttctattttaatatatttaaatttattaatgtgatgttAAAGTGTATTAGTCATGTCTTAtaatcttcagaaatcattcttcgATCAATTGTTATTGATGCTCATTTATtaatagtgttattttattgttatgttaCTGCTATTTTATGGAAACCATAATAAATTCCATAGttcataaaaacagcatttaatttattttattaacaattttataCATTCTTTCTCAACAAAACTTGTATTCTTTTAATCACCTAAATTTTGAATACTAGTGTCAGGCTTTCCATAAtaattccacaaaaaatattagccATTCATAAACACGTTTTagcaaaacagcatattaataatcatgTGACAAAGAATACTGGATTAATGcttgatgaaaattcagctctgccaccacaggaataaactacattccaaaaaacattattttaagttgcaataatataaaacgtttttactgcatttatgacccaataaatgcagacttgttAAGCATACAAggtctcttaaaaaaaaaaaacttgaattatTCAAACTTGATATGACTCCTTTATCAACAATACCTTTCGTTCTCCTACAGAGGCTAAATCTGTGCActtctgaaagttttttttaatttatttaatttaattttagtttcatgTATGTACAGTTTCTTCTATACCTTTATATACaattgtcttattttattgtattttaacattagAATAAGAGTGGCAAATGTACAAATGTAGTCTATAAATATctacaattttaataatgaataataaaaaacaattaatatatatacatatatatatatatatacacatatatatatatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatcaacaaaaataaataaataaaatgactttttgttacACTAAAACTACAGCATTGCCAATGCTGAAATGCTGAAGCccttaaagaacaaaaaaggttaagtcatatttaattgataaataattgtttatctGTGCTCTATAGACAATTTTGGATACCTTACCGATATTGCTTGAATGCAATATGGGTACATATATCTAcatatatctgttttttttatccatcaacaggtcaaaatttactgCATGGTGTTTAAAATAGATCAGTACAAATAACTAATACATAGTGTATTTTATAggctatataataaaaatgtagccTACTTTAAAAGAATTCCTTTGCACACATGTGCTTACTCTTAATGTCATGTAGGTCCTTacaaaacaatttataataaacagatgTGTCTGTGGCAGATAATTATTATCTGTTGAGAAGGCATGCATATAACCCAAATTGGAAACACATGTACCAAATAAATTCCTTTATGCACAACATAAAATCTCAATTAACGTTGAATCCACAGATGGCCCAATGGACCAATGGCATTGCACCATCATGTTGTTTTAGTGGAACTGGAATGTGTGCTTAAAAGACTGAATATAATGATCTGTTTGGTTCTCTAGAGCACATGGGATGGAAACAGTGCTTTCCTGCTGGAGGTTAATCGAGTTCTTCCTGGACAACAGATTTACTAGATACCAGAGTCTTTTTGGGAATTTCCCCCTCAGGTCCCAACAGGTCCCATGCATTCTATACTAGTTTAAAACACCTATCTAAATCATTGTTGTTTATCTTCTCCAACACTTTCACTTTCTGCTCAATTATACAACTCTGTCTTCTTGGTGTATGTTGTCGCCAAAAGCTAATGAAGTTTTCACCaacgaaaaagaaaagcaatggATCCAGGCAACTGTTTCCTGAGGCCAGACAGTGTGTAATGACTGCGGCCTTTCTCAGACTTTCAATATAATTACAGGACTCGTCATAACCATTGTTCTGAATGTTCATTTCAGCCTCTAAAAAAAGAGTTCGGACGACATGATATGGCATAAAGCATGTGAGAAAAATCAACAGAACAATAATGATGAGATAACAGGACTTCTTGTGATTGAACTGAGATCTTTGATTCTGCCTAATCTTTCTTAGCTTTAACAAATACAAGGCTGCAAAAATGTAACACACTGAGATGATCACGAAGGGCATAACGAagcctaaaaacaaaacacctcgATTCAACATGATGATGGTCCCCACCTGGGATGGTCTCAGGTCCAGGCATTTGGTCTGATTAGACTCCACATAAGTTCCAGCTTTCAGAAGCGGGATGGATGCCAAAGACACGATCAGCCAAATGACAATGCATAATGCCCAGGCTCCCCTAGAGCTTTGCCAGCGCACGTATGTGAATGGCTTAACGATGGCCACAAAACGAACCATGCTCAGAACCGCCAGGAAGTAGATGCTGCTGTACATGTTGATGTAGAAGATGTAGGACATGATCCGACAGGTGATGTCTCCAAAAGCCCAGTAGTCCATGAGATAGTAGGTGGCTCGAAACGGCAGTGAGCACACCATCATGAAATCAGATAGGAGGAGATTGAGCATGAGGATGTTGACAGGAGAAAAAGATGCTTTTCTTCTGAATGAtgaggaaatgaaaaagaacagaGACATGAGGTTGCCTACAAGCCCAAGGGAAAAGATGGAGAGATAGGCTATTGGGTAGATGGTGTGCTTAAAATCACTGATGGAGCAATTTGTGAAGTTCGATGAATTCATTGTTAGGTTGAGGAATTGTGAGAAGGCAGCCAAAAACCCAAATCCACAGAGTCCAATTCTTCACAAACGTAAGCTAAATCCTGTGCAACAGTAAGAGTGGTGAGAGGAAGCCGTATAAAGACATGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152727 lncRNA downstream 60386 3420311 ~ 3420777 (-) True G103377
TU152721 lncRNA downstream 120791 3359828 ~ 3360372 (-) True G103371
TU152711 lncRNA downstream 328499 3151728 ~ 3152664 (-) True G103363
TU152710 lncRNA downstream 329688 3150603 ~ 3151475 (-) True G103362
TU152586 lncRNA downstream 611023 2832054 ~ 2870140 (-) False LOC122359209
TU152782 lncRNA upstream 52578 3538208 ~ 3547028 (-) True G103416
TU152807 lncRNA upstream 113336 3598966 ~ 3603766 (-) True G103435
TU152810 lncRNA upstream 122219 3607849 ~ 3609465 (-) True G103438
TU152829 lncRNA upstream 339649 3825279 ~ 3825555 (-) True G103452
TU152831 lncRNA upstream 340924 3826554 ~ 3826758 (-) True G103454
XM_043258410.1 mRNA downstream 1363 3462493 ~ 3479800 (-) True rcbtb2
XM_043258411.1 mRNA downstream 1363 3464188 ~ 3479800 (-) False rcbtb2
XM_043258412.1 mRNA downstream 1363 3469633 ~ 3479800 (-) False rcbtb2
XM_043258409.1 mRNA downstream 18772 3424942 ~ 3462391 (-) False mtus2b
XM_043258408.1 mRNA downstream 18772 3424942 ~ 3462391 (-) True mtus2b
XM_043259618.1 mRNA upstream 266349 3751979 ~ 3773785 (-) False LOC122359312
XM_043258404.1 mRNA upstream 352226 3837856 ~ 3927360 (-) False mre11a
XM_043258405.1 mRNA upstream 352226 3837856 ~ 3927323 (-) True mre11a
XM_043258403.1 mRNA upstream 352226 3837856 ~ 3927066 (-) False mre11a
XM_043258407.1 mRNA upstream 368199 3853829 ~ 3927068 (-) False mre11a
TU152714 other downstream 317615 3156930 ~ 3163548 (-) False LOC122358351
TU152584 other downstream 612542 2756019 ~ 2868621 (-) False LOC122359209
XR_006252687.1 other downstream 735039 2719882 ~ 2746124 (-) False nek3
XR_006252686.1 other downstream 735039 2719882 ~ 2746124 (-) False nek3
TU152529 other downstream 805338 2674074 ~ 2675825 (-) False LOC122359207
TU152818 other upstream 267711 3753341 ~ 3770263 (-) False LOC122359312
TU152820 other upstream 267711 3753341 ~ 3773814 (-) True LOC122359312
TU152821 other upstream 267711 3753341 ~ 3755167 (-) False LOC122359312
TU152826 other upstream 330432 3816062 ~ 3816742 (-) True G103449
TU153319 other upstream 1952418 5438048 ~ 5438947 (-) True G103825

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_00271933_00272986.mRNA True 1599 mRNA 0.42 1 CI01000092 271388 ~ 272986 (-)