RNA id: TU152810


Basic Information

Item Value
RNA id TU152810
length 1276
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G103438
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 3607849 ~ 3609465 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGATGTGAGATGCAGTTTCGGAAGATTCAAGGCACCGAAATGAAAGAGATTAAGGTCAGAGAAGCTGAAGGCAATTGAGAGTGACGTCTGAAACAGGGTTCATCTGCAAATGTCCTGGTTCATTTGATGTACATGTATATTAGTTCCTTGGCCAGGTTTTTCTTCCCTTTGTTCTGCTCTTGTTCCATGTGAGTTCCTTTCCTGGATGAATCGGCTGAAGTGAGAACTATTCTTGAACTGTCTCAACTCTTCATATAACTGCGGTGTGGAGTTGGACTGGCGAGCCTCCTTTAAGCGAATCTTTGAAACCTTTGCGTGAATTTCACCGGTTGGACAGACACAGGAACTAAACTTGCACACCTTCAACTGGTAGGAGTGAAATTGCACAGTTCACTTTGTCCTGATCTGGAGTGGAGACTAAAGACTGAGATTACCATCAATTAATTGACAATTGAGACGGAATTTCTGAATCCTCAGGTTTTTTATCAGTTCATTGAGgaaattaatgcttttgtgAAACTTGGGTACGTCATTCAGAGAAattatactttgttttatttgttcattttcctAATTATAAGTCtgtgttgtttatttggtttaaagggatcactaaaataaaatctcattcaAATAATTTGTTCACTTCTGctacattctctctctctctcctcggaCGAACCAAACCTTTGCACTAACTGGTCTATCATCAGAGTAGGTCTAAACCTTACATTACGTATCACGGGTTACAACCTCCTTACCAAATGCCATTATTAGCAGCAGTCGGTGACATGGAAGatgaggaagaagtggagcaaaggttgtgatctcttttagagagatcaagagagggaattgtgggatttatgttttaaaggatttatgttttacaggttttactcattagaagcactgtgcccaggcctcataaaggctctgtgtttttccatttgatattatgtgtttttccattttgatattatgtgtgtatgtgctgtacaaaatgtcttatctacagaaacaagatatggagactgctgagctcatctactggtcgagaagaaacaactgcacctggttctgtgaaggacaccctgaatgggaggaagacccaagcacaagaatataaatattgtgtgaaatgtagtgtgagcatacaggactgccctgcatgccttgatgctgttgttctgtatcctgagctcagtctcaattattctgactttattaaacttattaagattttaaatttaagagtaagtctcatcattgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152807 lncRNA downstream 4083 3598966 ~ 3603766 (-) True G103435
TU152782 lncRNA downstream 60821 3538208 ~ 3547028 (-) True G103416
TU152767 lncRNA downstream 122219 3481163 ~ 3485630 (-) True G103404
TU152727 lncRNA downstream 187072 3420311 ~ 3420777 (-) True G103377
TU152721 lncRNA downstream 247477 3359828 ~ 3360372 (-) True G103371
TU152829 lncRNA upstream 215814 3825279 ~ 3825555 (-) True G103452
TU152831 lncRNA upstream 217089 3826554 ~ 3826758 (-) True G103454
TU152832 lncRNA upstream 217497 3826962 ~ 3827178 (-) True G103455
TU152841 lncRNA upstream 225725 3835190 ~ 3836248 (-) True G103464
TU152915 lncRNA upstream 336742 3946207 ~ 3946410 (-) True G103508
XM_043258410.1 mRNA downstream 128049 3462493 ~ 3479800 (-) True rcbtb2
XM_043258411.1 mRNA downstream 128049 3464188 ~ 3479800 (-) False rcbtb2
XM_043258412.1 mRNA downstream 128049 3469633 ~ 3479800 (-) False rcbtb2
XM_043258409.1 mRNA downstream 145458 3424942 ~ 3462391 (-) False mtus2b
XM_043259618.1 mRNA upstream 142514 3751979 ~ 3773785 (-) False LOC122359312
XM_043258404.1 mRNA upstream 228391 3837856 ~ 3927360 (-) False mre11a
XM_043258405.1 mRNA upstream 228391 3837856 ~ 3927323 (-) True mre11a
XM_043258403.1 mRNA upstream 228391 3837856 ~ 3927066 (-) False mre11a
XM_043258407.1 mRNA upstream 244364 3853829 ~ 3927068 (-) False mre11a
TU152714 other downstream 444301 3156930 ~ 3163548 (-) False LOC122358351
TU152584 other downstream 739228 2756019 ~ 2868621 (-) False LOC122359209
XR_006252687.1 other downstream 861725 2719882 ~ 2746124 (-) False nek3
XR_006252686.1 other downstream 861725 2719882 ~ 2746124 (-) False nek3
TU152529 other downstream 932024 2674074 ~ 2675825 (-) False LOC122359207
TU152818 other upstream 143876 3753341 ~ 3770263 (-) False LOC122359312
TU152820 other upstream 143876 3753341 ~ 3773814 (-) True LOC122359312
TU152821 other upstream 143876 3753341 ~ 3755167 (-) False LOC122359312
TU152826 other upstream 206597 3816062 ~ 3816742 (-) True G103449
TU153319 other upstream 1828583 5438048 ~ 5438947 (-) True G103825

Expression Profile