RNA id: XM_043258170.1


Basic Information

Item Value
RNA id XM_043258170.1
length 2307
RNA type mRNA
GC content 0.48
exon number 13
gene id tmprss13a
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 2048643 ~ 2060046 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATAAGAGGGCAGTCCTAACTGTGTCTTGAAAAGCAGGTTAGAAATAGAAAACAGGGTCTCATTTTTCCCTTGGGATTGCAGACAGAGGTTGAAATCCTGCCCACCGTAATACATAGACACTTTGGATCTAACCATAGTCCTCACTCCCGTGTCTAATGGCAGACGATGACACGaaGGACCCTCCTCCACCATACTACTCTGTGGCAGGGGACCCACAGACGCCTCCTATGACCTACGAGGAGGTAATTCTTCAGGACCAATATGGGTTCACACAGAAACCTGTGCCAGTCTATGTTCCGATGGATCCACCGCCAGTACAGGTAGACGCCGTCATCATCACCACACAGCATGTTGTTGTTCCTTCAAAAAGGCAGAAGTCTTGCGGACGGAGTGCCAAGTGTTGGGGTGGATGTGTAGGTGCGCTGCTGGTGTTGGCTCTCATTGGACTGGCCATCTGGCTTGGAGTACGTTACGGATCCAAGTCGTATTCTGGAAATTATGAGAATGACTGCAAGGGACAAGATTGCAAAGAACAGGAACAGGGCAGTGACTGCAAGGGAAATGACTGCAACGAACAAGAACACGGCAGCGATTGCAAGGGAAAAGACTGCAACGAACAAGGGCACAAGACTGAAGATGGCACGAGTGTACCTGACGCCTGCTCCAACTCCTCCAAGCAGTGTGACGGCGTCCAAAACTGCCAGCAGGCCGCTGATGAGACGAACTGCGTGAGATTTGCAGAAGGTGGAGTGCTGCAGGTCAGAACTGCTCAGGATGGTCGATTCCTTCCAGTGTGTTATCAGGGATTGGATCAGGGTTATGCTGACCAGATCTGTGAACAGATGGGCTTTAGAAGGTCTTATGCATCAAATCCAGTGGATAGCAAGACGTCTGTAGCCCTTACTGTAGGAAAGAGATCAGCTAAACTAATACAGGGTCTGGTAAATGTCAGTTCGGGATGTCAGGATGAGAAAGCAGTCTCGCTTGAATGTACAGactgTGGCAAGCAGCAAACTGCCTCCAGGATCATAGGGGGCAGTGCCTCTCAAATTGGCCAGTGGCCTTGGCAGGTTAGCTTGCATTATGGTGGAAGCCATGTTTGTGGTGGATCACTCGTCGCTCCAGACTTTGTTGTGTCAGCTGCCCATTGCTTCCAAGGCGCAATGAAAAATTCGGCAAATTGGCGTGTCTATGTTGGAACTATTTCCCAGAGTGCCCTTCAGATCCCTTACCTCGTGACGAAGATTATAGTGAATGAGAACtacagcagcaacaacaacgatTATGATGTTACCTTACTGAAACTCAGCAGTCCTGTCACTTTCTCCAGCATTGTGCAGCCAGTTTGCTTTCCTACATTTGACCAAACCTTTTCTGATGGATCAGAGTGCTTGACATCTGGCTTTGGGACGACACAAGAGGGATCAGCCCATGCCTCTACAATCCTCATGGACGTGAAAGTGAATATCATCAACACTCAACTGTGTAACAGCAGTCAGGTGTACCGCGGGGCCATCACCAAGAATATGATATGCGCGGGTGATATGAACGGGGGCCGGGACTCCTGTCAGGGGGACAGCGGAGGTCCGCTGGTGTGCAAGAGGGATGATGACCGCTGGTATCTGGTTGGAATTACGAGCTGGGGAGCTGGATGCGGACAAAGACAAAGACCCGGAGTTTATAGCAGAGTGACCAGCCTCCTGCCCTGGATCTACAGCAAGATGCAGCAAGAGAAGCCCTGATGTCTCTCTTCGGTACGACGTGTCCCGAGGACAACAGTGGACAGAGAAAAAGATGAAGGACAGAGCGATGCACTTTGACATGGGATAATGTTGCAATATTTGTAGCCGTaattggaaaaaagaaaacagactttATTCATCCCGCATTCTCAAgtaagaaaacaataaaacaactgaACCTGGGAGAGCAGAGCTGCAGGCGTCGAGGACCTCGGGGTCCCCTTCTGTCGCTGTGCTTTCCTTATTCTCTTCTTCGCATTTTTACTGTAAGTTCAGGGCACAGCTGCTGAATCTGAGCCTTTGTCGCCTCTTTGTATTGGTATCTTTTCTTCGGTACTATCCTTGCACTGAttctacaaaataatattagaaagTATTCTGAAAATACGTATTTCATAACCAAAGGGGTGTTCGTTTTGTTTGAAAATCAGTGTCTATGAACTACGATAAAATGTGGTTGTATTGTTTAAACCTATGTGAAGGGTCCGTCCTTTTCTATTTCAGATTCATACTGTTTCTTTATAAATCAtgccatttttatataaaaaaatgatacagtGAAAA

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152454 lncRNA downstream 19476 2023242 ~ 2029167 (-) True G103147
TU152446 lncRNA downstream 178294 1867855 ~ 1870349 (-) True G103140
TU152432 lncRNA downstream 203648 1843412 ~ 1844995 (-) True G103129
TU152376 lncRNA downstream 220343 1789059 ~ 1828300 (-) False G103094
TU152354 lncRNA downstream 222626 1780318 ~ 1826017 (-) True G103090
TU152469 lncRNA upstream 20026 2080072 ~ 2083216 (-) False LOC122359217
XR_006252692.1 lncRNA upstream 20037 2080083 ~ 2083265 (-) True LOC122359217
TU152464 lncRNA upstream 41491 2101537 ~ 2133846 (-) True G103155
TU152506 lncRNA upstream 401378 2461424 ~ 2462404 (-) True G103196
TU152521 lncRNA upstream 533402 2593448 ~ 2594442 (-) True G103208
XM_043259787.1 mRNA downstream 406 2029622 ~ 2048237 (-) True fxyd6
XM_043259786.1 mRNA downstream 410 2029622 ~ 2048233 (-) False fxyd6
XM_043259490.1 mRNA downstream 34730 1938471 ~ 2013913 (-) False LOC122359198
XM_043259486.1 mRNA downstream 34773 1906854 ~ 2013870 (-) False LOC122359198
XM_043258402.1 mRNA upstream 43793 2103839 ~ 2133148 (-) True scn4ba
XM_043258961.1 mRNA upstream 78521 2138567 ~ 2157977 (-) False scn2b
XM_043258960.1 mRNA upstream 78521 2138567 ~ 2156930 (-) False scn2b
XM_043258957.1 mRNA upstream 88711 2148757 ~ 2161269 (-) False scn2b
XM_043258958.1 mRNA upstream 88711 2148757 ~ 2161266 (-) False scn2b
TU152433 other downstream 203149 1844999 ~ 1845494 (-) True G103130
TU152377 other downstream 258816 1777020 ~ 1789827 (-) True G103094
TU151874 other downstream 1946709 98628 ~ 101934 (-) False LOC122359153
XR_006252662.1 other upstream 78521 2138567 ~ 2156930 (-) True scn2b
TU152493 other upstream 147301 2207347 ~ 2291926 (-) True G103183
TU152527 other upstream 614028 2674074 ~ 2675712 (-) False LOC122359207
TU152529 other upstream 614028 2674074 ~ 2675825 (-) False LOC122359207
XR_006252687.1 other upstream 659836 2719882 ~ 2746124 (-) False nek3

Expression Profile