RNA id: XM_043258384.1


Basic Information

Item Value
RNA id XM_043258384.1
length 2372
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC122358542
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 3378157 ~ 3410866 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGCGTGCCCGTGATTGGTTGTGGCCGCTTGTCAATCACGTACATGGGCGGTGTCAGGTGACATATGATAGTGAGTTCCAGTAAGCGCACTTAGAGTTTTGGTACACAGACATTCAACAAGCGACAGCAACAGGACTATCACCTAatactggactggactggattataaaactttataacAACACCAATCTGATGCCGTTGTAGCCACGTTGTGACTTTTCAGTCGTTTCCAATGTAACCAAGTCAGTTTAAAGTAACagcattttctttctgtttgttctttcgtttttcacgttttttttccttgatTGTCATATGTGACATTTTAAGAGACAAACAGTATTGCTGGTACCATGGCTGACGCAGCCCAAAACCAGATGGTCGAGATCGACCCGGACTTCGAGCCCCTCTCCAGACCCCGCTCCTGTACTTGGCCGCTGCCGCGTCCGGAGTTCCCCAACCCCACCGCCGCCGACTCCAACACATCGTCCCCGGCCCCGTCCGTCAAGCAGGAGCCCTCCAGCAACACGGACTTTATTAACAACCTCAGTTTGCTGGAAGAGAATGAGGACTACCCTGATCAGAAGCCCCTCATGCTGTGCGGCGATTTCCAATGCCAAGAGAACTGCATCCACCAGCAGCAAATCCCAAGTCACCAGCAACAGGTGCCAGTGCTTTCTTCTCCGGTGGCCGCCGCCGCTGCAGCCGCTGCAGCTGCTCAGCGCAAGAGCAGTTCGTCCAGGCGCAACGCCTGGGGAAATATGTCATACGCGGACCTGATTACCAAAGCCATCGAGAGCTCCCCCGAAAAACGTCTCACCTTGTCTCAGATCTACGACTGGATGGTGAAAAGCGTCCCTTATTTTAAGGACAAAGGGGATAGTAACAGCTCCGCTGGTTGGAAGAACTCAATCAGACACAACCTGTCCTTACATAGCAGGTTTATCCGGGTGCAGAATGAGGGGACAGGTAAGAGCTCTTGGTGGATGCTCAACCCTGAGGGTGGCAAAAGTGGCAAGTCACCTCGACGCAGAGCTGCATCTATGGACAACAACAGCAAGTTTGCCAAGAGCAGAGGAcgagcagcaaaaaaaaagCTGGCTCTTCAGGGTGGGCCTGAAGGGGGTGCAGATAGTCCAGGCTCTCAGTATGGCAAATGGCCAGGCAGTCCGAACTCCCACAGCAATGATGATTTTGATGCCTGGACGGCTTTCCGTCCTCGCACCAGCTCCAATGCCAGTACACTAAGCGGTCGTCTCTCGCCCTTTATCGATGACGAACTTGGTGACTCTGATGTCCACATGGTCTACCCAGGCCCTGGATCAGGTGCCAAAATGACCTCCACTCTCCCCAGCTTGTCTGAAATGGCTGGTTCTCTCAGTCACAGTGGCTCTGAGAATGTGATGGAGAACCTTCTGGATAACCTCAATTTGCTCTCACCTAAGAACCAATCTGTGGGGTCCACAGGAGGGCCTGGGTCAGGATCCAACCAGTCCTCACCTTCTTCACTCATGCAGGCCAGCCCAGGTTACTCCCCTTACAGTTCCCCAGGTCTAGCTGCAGTCAACCAGCAGACCCAACAAGACTATCGTAAGTGTCTTTATGGCCAGGCAGGAATGGGTAGTATGTCCCCAATGCCAATGCAGCCTCTACAAGAAAGCAAGCCCAGTTTTGTTCCTGGCCCAGGAACTTTGGGCCAGTTTAATTGCACAGCAGGTCTGCTGAAGGAGCTTCTTACATCTGATGGAGAGCCTGGAGAGCTCATGCCCTCGGTGGACACAGTCGTCTCCCAGTCAGCTGGAGGCAGTGGATGTATGTTGCCGCCCTATAATAGTGGGCGGAGCGAACTTATGGGAGGTGGAGCATCCCACAGCCATGCCCTTTCTCATCCACACAATATGCATGGACAAGCCACATCTCTGGCATTGAATGGGAGATCGTTGCACCCTCTGACCGGAATTGGTCACAGCAGTGCTGGTGGACGCTTAGGAAGCATCAAGTCAGCCATGCAGATGCAGTATGGAGGCTCCAGTCATCTTGGAGGTGGCCTTCCTCCTTACTGCAGTGTCAACAGCAATGGATATGGGCACAGCCCAGGGATGATGCCCCACCCACAACAGCAACACCTGGAGAAGCTGCCCAGTGATCTGGATGGGATGCCTGTGGAACGTTTTGAATGCGATGTTGAGTCCATCTTGCATGATACGCTCATGGACGGAGAATCGCTTGACTTCAACTTTGACCCCATGGCCACCCAACAGGGGTTCCCACCTCACAGTGTGAAGACCACCACCCACAGCTGGGTGTCTGGgtAAAAATCCTCTCAACTGGAAAACAGCAGCATAAAGCGGCTGTCCACAAGCATCAAAC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K07201 FOXO1; forkhead box protein O1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152721 lncRNA downstream 17785 3359828 ~ 3360372 (-) True G103371
TU152711 lncRNA downstream 225493 3151728 ~ 3152664 (-) True G103363
TU152710 lncRNA downstream 226682 3150603 ~ 3151475 (-) True G103362
TU152586 lncRNA downstream 508017 2832054 ~ 2870140 (-) False LOC122359209
TU152585 lncRNA downstream 509536 2759144 ~ 2868621 (-) True LOC122359209
TU152727 lncRNA upstream 9446 3420311 ~ 3420777 (-) True G103377
TU152767 lncRNA upstream 70298 3481163 ~ 3485630 (-) True G103404
TU152782 lncRNA upstream 127343 3538208 ~ 3547028 (-) True G103416
TU152807 lncRNA upstream 188101 3598966 ~ 3603766 (-) True G103435
TU152810 lncRNA upstream 196984 3607849 ~ 3609465 (-) True G103438
XM_043258139.1 mRNA downstream 133891 3152993 ~ 3244266 (-) True LOC122358351
XM_043259451.1 mRNA downstream 278212 3041025 ~ 3099945 (-) True LOC122359190
XM_043259510.1 mRNA downstream 508004 2756029 ~ 2870153 (-) False LOC122359209
XM_043259301.1 mRNA downstream 632033 2725825 ~ 2746124 (-) True nek3
XM_043258409.1 mRNA upstream 14077 3424942 ~ 3462391 (-) False mtus2b
XM_043258408.1 mRNA upstream 14077 3424942 ~ 3462391 (-) True mtus2b
XM_043258410.1 mRNA upstream 51628 3462493 ~ 3479800 (-) True rcbtb2
XM_043258411.1 mRNA upstream 53323 3464188 ~ 3479800 (-) False rcbtb2
XM_043258412.1 mRNA upstream 58768 3469633 ~ 3479800 (-) False rcbtb2
TU152714 other downstream 214609 3156930 ~ 3163548 (-) False LOC122358351
TU152584 other downstream 509536 2756019 ~ 2868621 (-) False LOC122359209
XR_006252687.1 other downstream 632033 2719882 ~ 2746124 (-) False nek3
XR_006252686.1 other downstream 632033 2719882 ~ 2746124 (-) False nek3
TU152529 other downstream 702332 2674074 ~ 2675825 (-) False LOC122359207
TU152818 other upstream 342476 3753341 ~ 3770263 (-) False LOC122359312
TU152820 other upstream 342476 3753341 ~ 3773814 (-) True LOC122359312
TU152821 other upstream 342476 3753341 ~ 3755167 (-) False LOC122359312
TU152826 other upstream 405197 3816062 ~ 3816742 (-) True G103449
TU153319 other upstream 2027183 5438048 ~ 5438947 (-) True G103825

Expression Profile