RNA id: XM_043259074.1


Basic Information

Item Value
RNA id XM_043259074.1
length 5375
RNA type mRNA
GC content 0.48
exon number 11
gene id akap1b
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16770502 ~ 16783868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTAGGACGGTCAACACGTGGGGAGGAGAGACaagagacacacatacacacacgcgaAGCGGGGGGACACGTTGGGATTGTGCTGGGCCTTGAACAcgtaacattaatattatacgGTGGCGGTGCAAGGGACGCATAAACACAGTGAGTATAAACGTGTAGCTGCTAGGGTCTAGAGGAGATGCCACTGAGGTTCCGGTCCTTTGTTCCATATACGCTTCCTGGAGTGCTGGCGCTCATAGGCTGGTGGTGGTACATCTCCCGCAAGAAAGAGCGAATCACCAGCCACGACAGTGAAGAGGGGTCAGTTATGGGCTTGCGAACCTCCTCTGGTGAGGGCAGCAATGGCATGGTCGACAAGAGCTGCCCCGCTGCCAGCAGCACACACCGCAGAACCAGCAGAGACCGCATCAAGGCCAAAGAGCACAGACCTGTTGAGCAGGAAGTTGTAGCGGAGATACACACGCCGGTGCTAAAAGCCACTGCGGGGGAGGCTCTCGGCGCCCCTCCAGTTGTTTTGGCCAGTGGACAGCTAAGCGCTCCTCAGAGCGGTACAAAATCAGTCCCCTCACAAAGCCACCCAGAGACAACAACTCCTGTCTCATCTTCAACCCCGACAAAAACAGTGGAGGAGAGCACTCATCACAAAGCACCAGAGGCCAGCACTGGCAACAAACCCTCAAACCAGTTACCGTCAGATCTAGCAAGCACTGTTTCAGTCAAAAAGCAGATCGAAAACCAACCACTAACTAAGCAGCGTCCCACAGTGCTAGCCAAAGCAGAGCGACCTGAACCTGAGGGAGAGGTGGCCGCTGAAACCTCAGCACCGACTTGCACTCAGAATCTCCCAGCCGACCTTTTAATAGATGAGCTGCCCTCTGCTACATCTTCAACAGCGAGTGAGACGGTCTTGCTGGAGACCTGCAACCCGAAAACGCCACTAACTCTGACCTCGTTCCCTACCTCCACCAGCACGCCCCTTTCAGAAAGCTCCACGGAGGCTCAGCACCATGAAAACGGAGACCTGGGCTTGCCGACCGAGACCAGTCCAGACATGCAGGAGCTCCAGCGTCTCGCGGCGGGGCTGATCACTGAGGTCATCTCGGCAGCCACCCAGGAGGTCATGGCGGTCAGCAGCTGTGAGTCCCGGTACAGCAAGGGCTCTGAAGCGTCCGACAGCAGCACGCCGGCTGTAAATGGCAAGGAAGTGGAGTCGTGTGTACCTCCTGAGAGCGAGGAAAGCACAGAGTCACGGGCGGCGCAGATAGCAGAAGACGTCGTCAACGGTTGTTTGGCACCTTCGCTCTGGAAGATGCCGGAGAATGAGAAGGCAAGAGGCTCATTGACTGTGCCGTCTGGGGAACAGTTGGAGTCCACGCCGATTCTGGCCAAGCTGCAGGCGGAAGAAGCTCTGGTGGAAGACTCGGGTTGTAGCACGTGCCAGTCCGAGGATGGCATCAGCAGCGAGGATCTCCACAGCACAGGGTTGTCCTCGAACGTGTCTGAGAGTAAAGAGGACCTCATTCAAATTTCAGGGACTTGTAGGGCCTCTGAGGGTCAAGGAGATGGACTGCAGGAGAGTCTTGCTCTAATTGCCCCTCAGGAGTCTCCTCTTACCGCAGAAAACGTGGCTACAGTTTGCGAGGCAGCGCGGTTAAATGGAACAGGCTTTAGAAATGGCGGTGCTAGTGAGGTAGAAGCCGACCAATCAGGAGGTTCAGATGTGAATAGCATGGATTCAGTGGACAGCTGTTCGACCTTGGGGGCGGGAGACGGCCTGCCGAGTGGCAGCCAGACCTGTCAATCACAGAGCTCTGAGCTTATTGTGTGGGAGATTGAGGTGCCAAAGCATCTAGTGGGACGGCTAATCGGTAAACAAGGGAGATATGTGAGCTTCCTGAAGCAGAGCTCTGGTGCTAAGATCTACATTTCAACCCTGCCTTATACTCAAGAGTTTCAGATCTGCCATATAGAAGgAACCCAACAGCAGGTAGATAAGGCGCTGGCCTTGATTGGGAAGAAGTTTAAAGACTTGGACCTGACAAACTTGTACGCCCCACCTCCCCCACCACTAACGCTGCCCTCTCTGCCCATGACTTCCTGGCTTTTGTTGCCCAATGGAGTGACGGTCGAGGTGATCGTGGTGAACATTGTATCAGCCGGTCACCTGTTTGTCCAACAGCACACTCACCCTACGTATCATGCCCTGCGCAGTCTGGACCAGCAGATGTTCCTGTGCTATTCACAACCCGGGACGCCCCCCTTGCCATCGCCCGTTGAAGttggaGTGATTTGTGCAGCCCCAGCTGTAGATGGAGCCTGGTGGCGAGCGCAGGTCATCTCCTTCTACAAGGATTCAACTGAAGTGGAAATTCGATATGTTGATTATGGTGGCTATGACAGAGTCAAGATTGACACCCTTCGACAGATCAGGTCTGACTTTGTGACATTACCGTTCCAAGGAACAGAAGTGTTATTGGACAATATCGCTCCACTTCCagGAGAGGATCGGTTCTCAGCAGAGGCCAATTCTGCACTGGAAGAGATGACAAGAGGGGTTCCATTGCTGGCACAAGTCACCAACTACGACAATAATACCGGACTTCCTTTAGTACACATGTGGAACATGGTGGGAGAGGAGctgGTCCTGCTCAACCGCACTTTGGCAGAGCGAGGTTATGGAACTTGGGTGGACAGTTTCTGATCCTCCAGAGCTCCCTCGCCCTCCTCTCCTAACTCACTTTGTGGCCCACCTGCCCCTTAATTATCACCAATCACCATGAATATCTGCAGGTTCTGTCCTCCTCACCCCATCGTGTCCTCCACCACCTCCTACCTGAAGTGTGCATCACTGGCTcctggagttttttttttgtttttttcgtttgttttttggtttgctGTCCTCTCCATCCTgcctttttctattttctttttttcttttctatccCCTTGCGTAAGAAATCGATGTACTGTATGAAAAAAGAAGAGTCAAGCGTCAATGACCGAACGACCAATAAGGACTGAAGCTTTCTTGACTCTCTGCTCTTGTAAATTTAAGATATTGTAACTAAATAAAGGTTAATCACGTTTTCCGTCCGATCAGACTCCTTCCAGCACAAAAAAATGCCTGTGGATTATCATGCCGTGGATAAAATCTGTAGTAATAAcgaaaaaaagtacatttatgaAGATAACTATGGTGCAGTTAAGACTCAGAGTTGTTGCTGCTGACGTAATTTTGGGACTTGAGACATcatgtttgcatttacatttatcatgGCTTAATCCGGTTGGGTGGGTTTTGAAAAAGCTGATCTATAGATCCGGCATTGGAATAAACGACTACAGCTCCTTGTCGTCTATCTTGATGTCTGTCTACAACAGTGTGGCCTTCGAGGGTGATACACAGCCCATCTCATGACCTCCCTCTTCACCACACTCTGGATCTGTAGGACTCCCAACAGCCTTTGGCTTCAATGGGCCTGACACCAAGAGTCACTTCATTTACTTCACCGATTACAGAGTCTGTTAATCCAGGAGACGTCTGTGCCCTCCTGACCTTTGGGCCTTCATAGGAAAGACTATGCTGAGTCTTCAGCCCTAGAGCGACACTAGAGTTTGAATGGTGCTGCTACAGAAGGCAAAAGGCCATCCTTTATGCCGAATTCTGACCTGTGGGGACACTAAATGAATGATTACAAAATCCAGAACACTACTGTGTGACGAGGACAGCGGGGCACTTCTATTCTGGGTGGGTGAACTACATTCAATGGATCTGTGCGTTTCTGTATGCATGTAATTTTGCTGTAAAGCACGTCGATTCACATGGCGTATTATCATCTGGTTAATGGGGCACTTGCTTTTGTCTCACTCAAGATCCGTCTCGCAATAACGTCACGTCAAGTAGACCCATTGCCATTAATTTCTCTTTGCATTCTGTAAATAACATGGTACACGGTGTCCAATCCCAACAACCCACCCAATTGGCTACTAGGAGAAGCTGACAATACACCTACCTGTCTCGGAGAAGATAAAAAGCTTTAAGCCTTatccatttctctttttttatgttggttTTACATGGGATGTCTTTAGGTCTGCTTTATTACTGTATAATTTGTGGAAGCATAATGGCACAGAGAttaatattccttttttttttctttttttgtatcttgTCATTGATCATGCTCTTTCAGTCATGTAATGGCTTTTTGGCCAAGGCTCGTCCCTTTTTCTGCTGCTGAATTATTTCTAATCTAATGTTGTTGGACTCCAGAATGTCTAAGGTCGTCCTTGCAGAAGACTTTTCCAGGCTTTTAGCTTGGcattgtggttttttttttttttttaagccctACAGTTGTTAGCCTCTAAAGCCCTGTGATAAACTTTCATTCgtgtgattaaaaataaactaaagctCCCCGTTAAGGCTTATATTAGCCTTgaccagaaaaaaaattgggtaaaaacagaaaatataggTTTTTACACTTCTTTTGATTCTGTAATACACACCGCTGACTTTAGTTGTAGTATAGAGCGCTAAATATGTGAAAACTGACAGCGTCGGAAAGTAACGTCAGCTTTAAAGCTAGTTGTCTGTGAGAGGCATTACACGGTTTTCCACTCTGCTATGTTTTCTGCAATATTTCCCTCACAAGCTCTTGTTTCTGTACTGTCCTGCGTTCATCTCAGGTATGAGCTTTTCATTTCTTACCTTTGTGTTTAAGGAGAAATATTAGTCCTATTCTTTCAGGAATTGATGTACTTGACCTGTGTGAACGAGCGCGGCCCATTATAGGTCTGCCTGCACTACAGCAGGTGAATAAGGAACCACACCGACCTCAGAGCCGAAACGTTTCATTGTTCTGTGTTTAGGTTTGCTCGTTTTACGGTTTTTGTATCGATCAAGTCAAATTACTCTCTGCGTACGCTCATATCTTGACTGACATGGCCTCCTACCACCAGTTCAAATGTGTCCTCCTGTATGTTCCTACCTGCTCTTCTGTAATGAAAAATCACGCTACTTTAGActtgtccaggtgtgtgtgtgtgtgtgcgtgtatatataagATGTCTCACTGTACTTTTGTAAAAACACTGGAGCGAGTGTAGGAAACAAAAgggaacattattattatttttttccaccccCACCTTGCGAAATCTGCTCATTTGTTCTCTGTTGGTAGGAATGGTTTGAAATGTTTGCTAGCTagacaattaatcatttgattatttaaatgagtGTAAGAAGTCCTGCATAGACATGTACAGGTCAGTTTTTGCCAGACTCATTAAAAGGTTTGATTCTTTGGTTGTACAGATCtattgggaaaaaaagaaaataaagttattaaaaaca

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K16518 AKAP1; A-kinase anchor protein 1, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158581 lncRNA downstream 172849 16551191 ~ 16597653 (-) False msi2b
TU158540 lncRNA downstream 346176 16414285 ~ 16424326 (-) False LOC122359003
TU158538 lncRNA downstream 357236 16413046 ~ 16413266 (-) False LOC122359003
TU158375 lncRNA downstream 486326 16164441 ~ 16284176 (-) True G107217
XR_006252598.1 lncRNA downstream 621764 16141997 ~ 16148738 (-) True LOC122358383
TU158598 lncRNA upstream 51476 16835334 ~ 16841735 (-) False nf1a
TU158669 lncRNA upstream 291772 17075630 ~ 17075857 (-) True G107429
TU158671 lncRNA upstream 299863 17083721 ~ 17084238 (-) True G107431
TU158676 lncRNA upstream 302801 17086659 ~ 17093363 (-) False LOC122359261
TU158679 lncRNA upstream 321256 17105114 ~ 17105384 (-) True G107435
XM_043258806.1 mRNA downstream 8438 16551282 ~ 16762064 (-) False msi2b
XM_043258810.1 mRNA downstream 8439 16551282 ~ 16762063 (-) False msi2b
XM_043258808.1 mRNA downstream 8439 16551282 ~ 16762063 (-) False msi2b
XM_043258807.1 mRNA downstream 8439 16551282 ~ 16762063 (-) False msi2b
XM_043258801.1 mRNA downstream 8439 16551282 ~ 16762063 (-) False msi2b
XM_043259070.1 mRNA upstream 1167 16785025 ~ 16841738 (-) False nf1a
XM_043259069.1 mRNA upstream 1167 16785025 ~ 16841738 (-) True nf1a
XM_043259064.1 mRNA upstream 1167 16785025 ~ 16834736 (-) False nf1a
XM_043259063.1 mRNA upstream 1167 16785025 ~ 16834736 (-) False nf1a
XM_043259066.1 mRNA upstream 1167 16785025 ~ 16834736 (-) False nf1a
XR_006252653.1 other downstream 8439 16551282 ~ 16762063 (-) False msi2b
XR_006252671.1 other downstream 344113 16415107 ~ 16426389 (-) False LOC122359003
XR_006252641.1 other downstream 860028 15907362 ~ 15910474 (-) False xaf1
TU158145 other downstream 988491 15776508 ~ 15782011 (-) True G107064
TU157568 other downstream 2448105 14298344 ~ 14322397 (-) False LOC122359058
XR_006252673.1 other upstream 3737 16787595 ~ 16834736 (-) False nf1a
XR_006252674.1 other upstream 3760 16787618 ~ 16834736 (-) False nf1a
TU158667 other upstream 279591 17063449 ~ 17075378 (-) False LOC122358654
TU158695 other upstream 413431 17197289 ~ 17198322 (-) True G107442
TU158691 other upstream 414978 17198836 ~ 17199328 (-) False G107442

Expression Profile