RNA id: XR_006252686.1


Basic Information

Item Value
RNA id XR_006252686.1
length 1993
RNA type transcript
GC content 0.46
exon number 15
gene id nek3
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 2719882 ~ 2746124 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATACGGAAGTGATACTATTGCTTTTACACCCGAAACAATGGTGATGCTATCCTTAATATATCCTTAATCTAGTTTCGTACtggtaaaaattatttataaaatacagaaatattttttctgtgtCATTTTTAAGTTGCTATTATGGATCAATATTCAGTAGAGAAAGTCATTGGCGAAGGGTCTTTCGGTCGAGCTCTTTTGGTTCAGCCAGTAAATGAagagcaaaaatatgttatgaaGGAAATACGACTGCCAAAGGCTGATTCTGGGATAAGAAACAGCAGAAGAGAAGCTGTGCTACTGTCCAGAATGAAACATCCAAACATTGTGGCATTTAAAGAGTCATTTGAAGcTGATGGTCATCTTTACATTGTAATGCAGTTTTGCAGTGGTGGAGATCTTCTTCAAAGGATAAGACagcaaaaaaatgttctgttcaCAGAGGACGTgATCCTGAAGTGGTTTGCACAGATGTGTCTGGGCACCAAACACATTCACGACAAGAGAGTACTTCACAGGGATTTAAAATCAAAGAATATTTTCTTGACAGAGAGTGGAAGTGTGAAATTGGGGGATTTTGGTTCAGCATGTTCTCTAAACAGTGGAAAAGCATATGCTCAGACCTATGTGGGTACTCCATATTATGTGTCTCCAGAAATATGGGACAACAAACCTTACAATAATAAAAGTGACATCTGGTCTCTTGGCTGTGTATTGTATGAACTTTGCACACTCCAACACCCGTTTCAGTCATGTAGCTGGAAGAGTTTGATCTTGAAGGTGTGTCGTGGGGCATATACACCTTTACCCAGTCACTTCTCCTATGAGCTACATTACCTCATCAAAAACATGTTCAAGACTAACCCTAAAGACAGACCATCAGTACACACAATCCTCAGCTCTCACCGTGTGTCTCGACTGCTGCATAAACACTTGGTGCCAGAGAATAAGGAACTGGTGCAAGAACGAACACACCactggaggagagagaaaggagaggaAGTGGCCATGTTTTTAGGACAGAAGAGTTTAGTGATCACAACTACCACTGAAGGAACTATGCAAGTAGAACAGTCCACTTTGGAAAACAACTGCATTGATGACCCAGCTTCTCGTAAGAGATGGGCAGTCGGAACTTGTAATACTGTGCTGGGGGTCCTAAGAAATGCTGACATCATTTCCACTGGTAGTATGGAAAATGCAGAACTAACTGGTCGCATTTCAGAAGCTGAGTGTACGAAGACCCAGGAAAGACGAGTGAGGAAACAATGGGACAAAGATCCACCTGAGAGACTCCTGAGTGCTCTGGAGAAAGCGCAGCTCTGCTATGGCTTTGAGACATACACTTTACATAGAGATGAGCATGGAGACAAAGTGGACGGCCCTGAGGAGATAATCACAGACTACAGCAGACTGGAGCCACGCTCAGATGATGAAGACACGGATTTTGAAGAGGAGTTTTCGTATGACTGGATAAATGAACTAGAGGAATTGATGGGCTAGAGAAACTTAAGTTCTGCCACCACCCAATCACGGTGATCTCTTTTACCTGGAAGGCCAGGCATACTCTCCTTCGGACCTCCCGGAGcaagttCCCAACAGGAGTGGGCATGCGTGAGAGGAGGGGGCGTGGCattggacaggtctggcggcctgtgacgaggcacacctgaagtgcaTCGAACCTCATCACCGCTGCCGTTAAATGCCGAGcacgcctctcctcgagagaggAGTGAAGGAAGAAGTGAAGGAGAAGCCACAGGAAGAAGCCACCACCCCTCGCAccccggaccagagaggggagcgcatgcggccgccggactccgccccttacctagACCCTTCCCCTTGGAACACTACCCTACCTACACTCCCCATGCAGCatgacgaggacaccagttcccccgtttattttggacactctttcccctggacactttattttgaatatttttgttaataaaaagcctctccgaggcctgaagccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152538 lncRNA downstream 13814 2705686 ~ 2706068 (-) True G103215
TU152533 lncRNA downstream 14859 2704153 ~ 2705023 (-) True G103214
TU152521 lncRNA downstream 125440 2593448 ~ 2594442 (-) True G103208
TU152506 lncRNA downstream 257478 2461424 ~ 2462404 (-) True G103196
TU152464 lncRNA downstream 586036 2101537 ~ 2133846 (-) True G103155
TU152585 lncRNA upstream 13020 2759144 ~ 2868621 (-) True LOC122359209
TU152586 lncRNA upstream 85930 2832054 ~ 2870140 (-) False LOC122359209
TU152710 lncRNA upstream 404479 3150603 ~ 3151475 (-) True G103362
TU152711 lncRNA upstream 405604 3151728 ~ 3152664 (-) True G103363
TU152721 lncRNA upstream 613704 3359828 ~ 3360372 (-) True G103371
XM_043259507.1 mRNA downstream 44106 2673801 ~ 2675776 (-) True LOC122359207
XM_043259506.1 mRNA downstream 44107 2673801 ~ 2675775 (-) False LOC122359207
XM_043259504.1 mRNA downstream 44117 2673807 ~ 2675765 (-) False LOC122359207
XM_043259508.1 mRNA downstream 44125 2674057 ~ 2675757 (-) False LOC122359207
XM_043259862.1 mRNA downstream 333012 2289831 ~ 2386870 (-) True zgc:172282
XM_043259510.1 mRNA upstream 9905 2756029 ~ 2870153 (-) False LOC122359209
XM_043259451.1 mRNA upstream 294901 3041025 ~ 3099945 (-) True LOC122359190
XM_043258139.1 mRNA upstream 406869 3152993 ~ 3244266 (-) True LOC122358351
XM_043258384.1 mRNA upstream 632033 3378157 ~ 3410865 (-) True LOC122358542
XM_043258385.1 mRNA upstream 632266 3378390 ~ 3410866 (-) False LOC122358542
TU152529 other downstream 44057 2674074 ~ 2675825 (-) False LOC122359207
TU152527 other downstream 44170 2674074 ~ 2675712 (-) False LOC122359207
TU152493 other downstream 427956 2207347 ~ 2291926 (-) True G103183
XR_006252662.1 other downstream 562952 2138567 ~ 2156930 (-) True scn2b
TU152433 other downstream 874388 1844999 ~ 1845494 (-) True G103130
TU152584 other upstream 9895 2756019 ~ 2868621 (-) False LOC122359209
TU152714 other upstream 410806 3156930 ~ 3163548 (-) False LOC122358351
TU152818 other upstream 1007217 3753341 ~ 3770263 (-) False LOC122359312
TU152820 other upstream 1007217 3753341 ~ 3773814 (-) True LOC122359312
TU152821 other upstream 1007217 3753341 ~ 3755167 (-) False LOC122359312

Expression Profile