RNA id: XM_043259659.1


Basic Information

Item Value
RNA id XM_043259659.1
length 5144
RNA type mRNA
GC content 0.42
exon number 3
gene id si:dkey-202l22.6
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 1889683 ~ 1896275 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTGGGGCAAATTCCAAAAAAGCAGACCGTATCACTCTCAAGGTTCATATAAAAGCTCAAAGCCATACCAGCCACGTCATTCATGATAGCACACAGCCTGAGAAAGCATCCCAAAATTGAGGTCAATGTGATCCTTCGAATTGTAGctgacaattaaataaaacaatgtctcTACATCGGAAGACTGTCCCTGACCCAGGACCCCTGACCACTGAGATAGTGTCTGAAATTGACAGGGACAAGAATGTTTTACTGCACATGCTGGACCTGCACAGGGAAAATGTGGCACCTCTGGACCTTACCACAATGCAATATGTAAGCACTCCAAGCACTGAAGATGAACTTCCACAGGACCCAACAGAGCTCTCGAAAGCATTCCTCCGGCGTCTCTGGCTATGTAATCCCCAAGCCCGCAGCACTTACTGCAAGGTACCAGTAGGAGACTACGGTTTGGTCATGGATGAGAATTCACAATGTGCTATCAATCCTTTAGACCTGGTTGCTGTCACATACATGACAACAAATAGTTTCCTACAGCAAGAGATCACCCAGCGAATGTTGCAATGCAGTTTTGCTGTGCCTCTGTATCTTCCACCTATTCACCCAGAAAAGAAGGGAACACTCCTCTTATGTCCATTTAGAGGTGTTCTTGGTCAGTGGAAGTCACCTTCTGAGGGACCCATCATGAAGAACATGGCTGATTCCAGGATGCCATTTCTCACCGCAGTGAGGCTAGGTACTTGTAACGTCTCTAAATCTCGAATACTCAACCGTGTTCTCAGGGGTCCACGTGAGCTGAATGACTACTATGTAAACTGTGGTATGGAGGGAGGTCAGCTGCCTCGGGTTCTCTCAGAAGGTATGGTGGAGGTTTGTTGGAACTTGCATTCAGGAGATCATCATAACAACACCTTTTCTCGTCCTGTGCTAGTAGCTAATCTTCGTGGAGATGCAGCTAACTGTGAAAAACAGATGAGTCTTCTCTGTTACACATCTGCAGTCCTCATAGTTTTTTGTGGAAGTTTTGGTGCCAAGGAACGAGACCTGCTTGCCTCATGGAGGGACAATACAAGCCACATGATTATAATCGACTGCTCAACATCAGTAGACGATGGATATGAGAATCAAAATGAGAAACTGAAACAAAGGCTGATGAAGGATTTAGAACTTCCTGATGGAACAATGCTTAATGGCTGTGAAGGTGATGAGGAAGAAATTGCTGAGAACTTAAGAGATGTAATGGATCGTTTTATTCCATACCTGCATGCCACAAACCTTGTAGGTGCCGCCGGTATGGCTAATGACCTCGACATTAATGTTGATGAAGATGAGCTCTGTCGAATGGCATTCAGTGAAGCTGAAGAAGTCCTGTGTGGAATTGAAGATGGAGTGTCTAGCTATTTGGAAAATCAGCTGCCCCTGCAAGGTACAGTATGGAATCAGTTGTGTCAGCTGGAGAAGGAGGAGGCACGTCACCTACAACATACATCCCATAGCTTAACAGGGGAGAAAGAAAACCTCATAAAACAATTGCTTGATTATAAACTAACAACAGCCATGAAAGCCTTCACTGCAGCTCTTTGTTCATTTGACACAACCAAGAGGGCATACTTTCTTTCTTGGATGAGAGTGAAACTTGAAGTTATGCAGTTGGATAACCTATCCCATCCAAGGAAAGCAAATGAGGAACAAGTGCAAGAACCTTGCATTGGACTTGAACACTTCCTTCGAGAAATGGGACTGGTCTACGAAAGATACTTCCGCAGCCCAAACAGTGACTTGTACGACATGTTCCGATTACCATATTTAGGGGCTGAACTACTCTTATATGGAGTTCCCCTTGAACTTTATGATGGGGATGTCTCAGTATTTCCCATGAACTGGGTATACAGCGTTCTTTACGAGGTGCACAGACAGCTGCCAAAGTTCAGTCGCATGAGAGTTCTGACAGTCCTAGGTTTCCAGAGATCCAAGAACGCAGAACTCTTATCTGCCTTGTTTGGTGTTAACTTCCCAAAGTTGGGTAGAAGGCATATCAAAGGGGCATACATGCTTCTCCTCAGCCTGCCTGACAACTTCAGAATGGAGATGGACTGTGAATTTCTGTTGTTGATTAGTACAGAaggtttgaatgctcaaacagaAAGAAGCCTTGTGCATGCAAGTGAACTTGCTACCTTTGTCAGTGGACTAAGTGACATCACACTAATAAATCTACCAGATGAGGATCAGAACGAAACAAGACACAACCTTCAGATTGCTGTCAATGCTATTCTCTGCACACGAAATTTGGAGAGGAAGACTACCTTTCAGGTTGCTTCAGATAGAGCAGGAATGGATGGAAAAATCATGAGTTGTGTAGTCGATGTACTGACCACAGGACAGCTGTCAAATGAATCTCAAAGAGAAACACTTCCCACAATTGAAACAAGAGGTATAGGTGGCAGCTCTGTGACTACACAAAATGATGCAATTCTCAGGCTAAAGAAAAGACTGTTGACTACCTTCCATGAAAAAGCATCAAATGGCCAGCCAACCTGCTTGGGTGCATTTATGGAGCATATGTTAAGAATGTGGGAGCTAGTAAAAAATGGAACGCTTTCCATTAATTTGGGAGACACAGCCACAGCTGATGCCATCATTGGCCTCTGCAGAAAACTTGTACAGGGAGAGAAGCAGCTAAGTGATCAACTGGATATATGGGTTGACACATTGGAAAATCACATAACAGAACTAAAAGAATCGGCATCCCAGAATAGAGAACACATGGATTCAGATAGAATACTCAGAATCTTGAGAGACGAGGCAGCTACCCAAATCCTTACAGAGAAAGACAATATTAAAGCAAGTCTCTGGGACTACCTTAGGCAGGAGGATATTGATACTGGCCTTGTGGAAAATTACAAAGTAAGCCTTCACAAAAAAGTAGACCTCATTCAGGAGCAAATGACATCTGATGTTGCCCAGAAACTTGAATCTGCTACTATTTGTCATGATATGACTGTTAAGATGCACGCCTTATTGACATCACTTGAAGCAGCCCTGGAGGTGAGGTTACGTTCACTCTTGCAGACCTGCAAGAACAATAACTTAGTGATTGAGGACAAGGAGCTTGAACGTGAATTTGTTAGTGTTTGGGAAAATATCCCATCCAACATGAATGATTCCCCCTTAGAGACACAAGAAATCTTTACAAGGATATTGGAGCAGCTAAAGAAAAACCTAAGTGATCGTGGTCTGAAAAGGCAAAACATAAGACTCCGAGATGCAAACCAGATCAATGGCTTTAAAGTGAAGACTGCCCATTTTGCTTTGAGTAGTAAGATGAAGAAAACATTGAAGTACAATAAAGATGTTGCACAAAGATTTACCAGAAATTTGCTAGAAGACTGCGACAGAAGAGTCTCAGATAAAGTGTGCCACAAAGAAGGCTACTCAGACAGCTACATGAGAGAGCTGCTTGCAATTGTGGACAAAGGTCTAGAAGTTTTAAAAGGTGAGCCATTCGTGATGAGTCCCAAATTTGAAGTGGATGTCAAAGGATACGTCTGTGGCAAAGCAGCAGAGTCCTTTCAAGAGGTGCAGGAGTCGTTCATAAGGGAAAGGCAAATAAAGGAGAGATTCCTAAATGAGACCAGGGAGAGGCACATGTTGAATTTCATGTATCAGTTTAGAAAAAGAGACCAGTGTCAAAAAGCTGCTCAATCTTTCACCAGCCAGTGCCTCAGGCCAACAGTCGAAGACTTCATTTACAACAGCTTGGAGAGACAAATATTCAATGATATGCTCAAGAACAAAAATGCACAACTTTATAGCTCGCCAAAGAAGTTCCATTACAGTCTTCTTAAAGAAATGCTGATAAAAGACAGCTTTGAGGATTTCCATGAGTACCTTCAGTCCCACGAGAGCTTCTGCCGGAAGACTATTGAGAACTTTATCAGAGTTCATCTGTCAGGTTCTGTTATGATCGAAGACCGCAGGGAACAAAGAATGCATCAAATGTTTGATTGGGTGAAGAGGTGCATTAATCAGGCATCTGAATCTAGCAGTGGGGCACAGAGCAATGTTAGACAACTGCTTGAGGAAGTTTGTGCCAGCCTGCAGAGTCTAGGAAAAATCACTATGCCAACTCAAATCTTAAAGAAACCTTTGTTTGACATAAGTACGCATCGTGAGCATTTCTTTGCAAACCTAGAGGAATCTGCCTATGAGTTATCCTCATCAATTGCTCAGGAATTTATGGAGAACGAGGACGTCATTGAAGTCCCAGATGACCTCCCAGATAAACTTCAAGACATGCTATATGAAAGAGTCAAGGGGTGCGATAAGCGCTGTCCTTTCTGCAAAGCTCCATGTGACCAGGAAGAAACAGAACATCACATGCATGAAGCGGTGGTGCATCGCCCCAAAGGTCTAGTTTGTTATACCAAGGCCAACTCTACCACTCTGTCTCACAACACCTGCTCTGCAGATATTGCAGGACAAAACCAATTCCAAAACAGAGATACAGCGGGCCGGTCTCTGCCCTATAAGGAGTACCAATCCATCTACCCAGACTGGAAAATTTACCCTGAAGATCCTAGGAATAATGGGGCTGCAGTCTACTGGAGATACGTGTTTATAAGGTACAACAGTAGATTTGCTCAAAAATATCAGTGTGCACCTGCAAAACTACCCGAAGCATGGGGAAATATCACTCAGAGGGAGGCTCTACAGAGCTTGAGGGAGGCTTTTCAAATTACAGAGTGATATTGTCCTGCGCAAGCTTTATTATATCCATgtctgtttatgtatatattttttagcttATAAAACAGTTTACTGATACAGATCTTAAACACTACTAaagaaatctaaataaaatagacgCAAGGTGAAATTCTGATTCATAATTTATATGCCAGTTGATGAAAGAATTAATGAACTCTTTTGTGTAATTATGTGGTTTAAATACAGACTTATATATTACCACATTTGCatcttaaatgttaaaagtaaaaatataaacataatgcaGTGCTACTCAATGTAAACAATGTGCTTTGTTACTCTACCAGTGAGATATATGCCACTGTTACTCTGTTGTGATTATGAATGTTGCAATGTCTTCGAtacaaacaatcaaataaaaaattgcaaaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152446 lncRNA downstream 19334 1867855 ~ 1870349 (-) True G103140
TU152432 lncRNA downstream 44688 1843412 ~ 1844995 (-) True G103129
TU152376 lncRNA downstream 61383 1789059 ~ 1828300 (-) False G103094
TU152354 lncRNA downstream 63666 1780318 ~ 1826017 (-) True G103090
TU152405 lncRNA downstream 145210 1741721 ~ 1744473 (-) True G103114
TU152454 lncRNA upstream 126967 2023242 ~ 2029167 (-) True G103147
TU152469 lncRNA upstream 183797 2080072 ~ 2083216 (-) False LOC122359217
XR_006252692.1 lncRNA upstream 183808 2080083 ~ 2083265 (-) True LOC122359217
TU152464 lncRNA upstream 205262 2101537 ~ 2133846 (-) True G103155
TU152506 lncRNA upstream 565149 2461424 ~ 2462404 (-) True G103196
XM_043258353.1 mRNA downstream 7175 1878215 ~ 1882508 (-) True si:dkey-202l22.3
XM_043258363.1 mRNA downstream 82199 1801988 ~ 1807484 (-) False LOC122358522
XM_043258362.1 mRNA downstream 82712 1801988 ~ 1806971 (-) True LOC122358522
XM_043259842.1 mRNA downstream 121612 1767053 ~ 1768071 (-) True LOC122359511
XM_043259346.1 mRNA downstream 311551 1391803 ~ 1578132 (-) False cadm2b
XM_043259487.1 mRNA upstream 10579 1906854 ~ 2013874 (-) True LOC122359198
XM_043259486.1 mRNA upstream 10579 1906854 ~ 2013870 (-) False LOC122359198
XM_043259485.1 mRNA upstream 10579 1906854 ~ 2013870 (-) False LOC122359198
XM_043259489.1 mRNA upstream 10579 1906854 ~ 2013869 (-) False LOC122359198
XM_043259488.1 mRNA upstream 10579 1906854 ~ 2013869 (-) False LOC122359198
TU152433 other downstream 44189 1844999 ~ 1845494 (-) True G103130
TU152377 other downstream 99856 1777020 ~ 1789827 (-) True G103094
TU151874 other downstream 1787749 98628 ~ 101934 (-) False LOC122359153
XR_006252662.1 other upstream 242292 2138567 ~ 2156930 (-) True scn2b
TU152493 other upstream 311072 2207347 ~ 2291926 (-) True G103183
TU152527 other upstream 777799 2674074 ~ 2675712 (-) False LOC122359207
TU152529 other upstream 777799 2674074 ~ 2675825 (-) False LOC122359207
XR_006252687.1 other upstream 823607 2719882 ~ 2746124 (-) False nek3

Expression Profile