RNA id: XM_043259786.1


Basic Information

Item Value
RNA id XM_043259786.1
length 2840
RNA type mRNA
GC content 0.43
exon number 9
gene id fxyd6
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 2029622 ~ 2048237 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACGCTTATAAAGACCAACCAACCACTACTCGCGACCAACGCGTGCGGTGTCTCTCATTGCGCGCGTGGCGGGGCGGGAACCGAGAGAGCGGGAGAGGAGAGACAAGGGACAAACCAACagtcaatatatttatatcagaAACGAGGAGGTGAACCGCGTTGGCTGCTGTATAACACCAAACGCTCGTTTAAGTGGACTGGTATCCATTCATAACTTTTCGCTCCATCTCAAACCGCCCCAAAAATCCActtaacagaaaaaaacgaCTCGAGGACCCTACAGTCGCGCGGATCGTGAAGCAGCGTTTGACCCACTGTTGCCCATCCACTTACAAGTACCCTTAAGGAGACGAGACGAGTTGCCATGGAAACTGTTCTGGTCTTCCTTTTTTCCCTCCTAGTCTATGTGGCGGCTTTGTCTGAATCTGCTGTCCAAGATGGAAAAGACAAGGGATTGAAACCATTTGTATACGACTACGAGAGTTTGAGGATTGGCGGATTGGCGTTTGCTGTGGTGCTGTTTGCTCTGGGAGTGCTCCTTATTCTCAGCCGCAGATGCCGCTGCAGTATCAACCAGAAGCCCAGGGCTCCAGGAGATGAAGAAGCTCAAGCAGAGAACCTCATGGTCTCCAAGGccAAGGAGACCCCTAAAGCTGAAAACTGAAACAGTCCAGTGATGTTGAACACATAGCTGTGGCTGAACAACTTCACTGATGCTGCggatgctgatgatgatgaagcTGATTCCAGACCACGGCTATGAGAGGATAGCGAGGAGACAGATTTGTGGGGGAGGCGACTATGACTTGGATTTTTAATGGGTCAGTGTCTTGTACGTAGACCTCTAGTCCTGTCACGTTAACAGTAACCGTATCCGTCTTTTCGTCCGTGCCCTTTTGCAACAGTCCGTCTTGAGTGAGTTGTTTTAGCAAAACTAGCCACTTTCTGCAGATCATTCTTAACATTTTTGGCTCCTCCCCAACCGAACTTGTGCATGAGGTttaaaaggaacagttcacccaaaaatgtatattctccttccaaatctgtatgcagttatttttttagcGTTGAACACGAGAACAGATCATATTAAAGATTGTTCGTTTAGCCCTTGTTATATAATGGCAAAAcctaaaaaagaacaaaaacactatagttgtaatttttggttgaactgtctcttaaaaaaacaaaaacaaaaaaaaaaaaaacatcttaacatCCAACAGTGATTAACTGTTATCGTTATTGTTGGTAAGACCACTTGTTATTGTCATTTGTGTCGCACCTGCTGTTTTTTCTCTTGTAGATTGTATAGATTAtatgcacaaatatttaaagtatttaatataaGTATTGATTCATATGTGGtgcagaaaatatatttgaatatacgGTGTATGCATGTGTGCGCGCGGATGAATAGACCCTATAGAGTTTGtatgaatgcgtgtgtgtgtgtgtgtgagtgtatgtatgCCCACATTCAGGGCTCCTCCTCCCGACAATCTTTCGACCATTGTACCCAGACCaagcacaaaaacaatacaGTACCACCACTGTACCACAGGGGGCCGTCCTCTGATCAGCTGCAACACTGCCGGGCTCAAAGCCCCCATTCGGACCCACAGCCTAAATGTCTGCGGCCTGAGAGCAAGACCGCAGAAGCAGTTCACTTCACCATAGTGCCACAAACTCGTGTCGTTTATCTTTACTATCACATGTCTTCTGTAGCCTACGTATTCACTTtcttaaaaggaatagttcacccacaaataaatattttagtattgtctactcaccctcatgtcattaaAGCTTGTTatgtggagcacaaaaggagatattttgctGAACGTCCAAGCAGCTGTTTCCATACGGTAAAATCAAGCATAAGGTATAATAGAGCATATGCAGCCGAACTTTATTTGTGTGCGGACACAGGCCCTCAtggttttattgtagtaaaagtGCTGTAACCAAGTTGTTTCGGgacagttttactacaaatacctTGGTTAAACTACGGTTTCTGTGATTAATTTTCATAAGGGTTGGAAAAAGTTCTGATGAATATGACACAATAAGTGGAAACACTTCAAGTTGTCGACAGATTTATCgaattatacaggatttccgGGAGACGTGTGTCGTGTTATTTTAACTGTGAGAGCTTATCGAGATCAACTAAACACTGGatttgaaaaagtatgtgaCATTTAAATTTCGCAGCACTTAAAATACGTGCAAGAGTTTTACATTTCCACGCCCCGAAACGAAACGCTGAGTGAAACAAattgtgattggttgtttgacgTGTCAGTCAAACTGCCTCATGGGCGGGCCTTGGCCAATGAACGCTACCACGGATTCCAGACCTTCAGCCGTCGGCCTGGTGGTCTGGCTACGCAAGACTACGGTGAACTTTGActacatgaggttgagtaaacaatgacagaacaTTTTTGGGCGAATTAATGCTTTCATATCACTCATATTTATAAACACTGTTCAATGGGACCAAAATATCGGCCTCTAAAGAGACCAACCTTTGCATTTGTGTGCGTCTGCgtatgtatgtgagtgtgtgtgtgtgttgttccaCACATCACTTGCTGTGATAAACCTACGAGAGCTGTAGAAATGTAGGCCAGTTTATAAAGAGAGAAGCGTTCCACAGAATATTAATCACATGTATTCAAGAACACAGTCTAACGCTACAGACGCTTCGCTATTAGAGAGGAATTTAATACATATTCATCTCATATCTGTGCAGCTGCTGTGTATGGCCGCTCTTTGTGCTTCgaaataaataaagtctttgTCTGACACAGGCA

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152454 lncRNA downstream 455 2023242 ~ 2029167 (-) True G103147
TU152446 lncRNA downstream 159273 1867855 ~ 1870349 (-) True G103140
TU152432 lncRNA downstream 184627 1843412 ~ 1844995 (-) True G103129
TU152376 lncRNA downstream 201322 1789059 ~ 1828300 (-) False G103094
TU152354 lncRNA downstream 203605 1780318 ~ 1826017 (-) True G103090
TU152469 lncRNA upstream 31839 2080072 ~ 2083216 (-) False LOC122359217
XR_006252692.1 lncRNA upstream 31850 2080083 ~ 2083265 (-) True LOC122359217
TU152464 lncRNA upstream 53304 2101537 ~ 2133846 (-) True G103155
TU152506 lncRNA upstream 413191 2461424 ~ 2462404 (-) True G103196
TU152521 lncRNA upstream 545215 2593448 ~ 2594442 (-) True G103208
XM_043259490.1 mRNA downstream 15709 1938471 ~ 2013913 (-) False LOC122359198
XM_043259486.1 mRNA downstream 15752 1906854 ~ 2013870 (-) False LOC122359198
XM_043258170.1 mRNA upstream 410 2048643 ~ 2060046 (-) False tmprss13a
XM_043258171.1 mRNA upstream 410 2048643 ~ 2060046 (-) True tmprss13a
XM_043258402.1 mRNA upstream 55606 2103839 ~ 2133148 (-) True scn4ba
XM_043258961.1 mRNA upstream 90334 2138567 ~ 2157977 (-) False scn2b
XM_043258960.1 mRNA upstream 90334 2138567 ~ 2156930 (-) False scn2b
TU152433 other downstream 184128 1844999 ~ 1845494 (-) True G103130
TU152377 other downstream 239795 1777020 ~ 1789827 (-) True G103094
TU151874 other downstream 1927688 98628 ~ 101934 (-) False LOC122359153
XR_006252662.1 other upstream 90334 2138567 ~ 2156930 (-) True scn2b
TU152493 other upstream 159114 2207347 ~ 2291926 (-) True G103183
TU152527 other upstream 625841 2674074 ~ 2675712 (-) False LOC122359207
TU152529 other upstream 625841 2674074 ~ 2675825 (-) False LOC122359207
XR_006252687.1 other upstream 671649 2719882 ~ 2746124 (-) False nek3

Expression Profile