RNA id: TU169046


Basic Information

Item Value
RNA id TU169046
length 1312
RNA type TUCP
GC content 0.37
exon number 2
gene id LOC122360533
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19643829 ~ 19647806 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtaggtttagggataaatgcgtatcatatgcacgcaaACAAATTCAGTATCATATGTACGTGAAAACGTATTACATGCAACACgtgcgtatcatatgcacgccaaagtcattcttttaaaagtttttgtttttatttggcatactaTTTATACGTATTTTTTATTAGGGCTGTTTCAAATATCTTACTTTCTGTaggtttaaatgtataattaatacagaaattacaaacaaaaatcagTGGGGCCACAATGTTCTGTATCTTCTGTACCGTTTCAGAGGGTTATTTGTTGAAATTGTAATGTCAtctaattgttttcttttcttcttcgtTTTCAAAGGAGGCCACATTATTTCTAGGATTGCCTGTTGATGAAACTGCAAAAGGGGCAGACTTTTCCTACACAGTGTCAATGTTTGAGAAGAAGTGTTTGCCTGAACCCGAACTGTGGCTTTATCAGTCTCTGGTTCCCCTGTCTGTGGTCCTGGCCTCGCTGGTTGTTCTGATTCTTCTTTCATCACAGATGGTCCAGCTCAGAGTTGTGCTATCTGAGCAGTTTTTCTCAGATGTTGCAGAGGAACGAGCTGCCTATCTGCATGCAAAGATTTTAAGAAAGAGGTGCAAAACTAAAGCAGAAGAGCATGAAGGAGCTCTGAAGACTTTAGCCACGCAGcCCAGCTTTTGGTGTCCTTTACTCTTCCATAAACACAGGATGGACCCTGAGGCTGTTTAAATATGCTTGAAGTTAGCAAACACCAGTCAAGCAACCATAATTGCAGGTTTTACATGTCAACAACTCACACACTACTTTTTGGCAGAAAGCCTACCTTAGCATTGCATTGTATACAGAAAGGATGTGTCCTGTTTGTTATGAACTACTACATAGGGGGCAAGTGGATAATAGGCCATGGGTCCTTAGTGATCAGTTTGTGCTGTATGGACCACACCTTTTCCAAACTATTCATTTTACTCCTTCAGGGGTTAACAAACTTATATTGAGGTAAAAATGAGCAATGAGCACAGGCAGACGTTTAGACCTGTATGTTCAAAAAGTGTAGGGCTGGTAAGACTTTGTCAATGACGTTGAAAGTCCGCCTTCTTAcaggctatatttatttgattgcaaATACgctaaaaacagtaatattgtgaaatattattacagttttaaactttttaaaacttttctattttcatatttttttgtatattatgtaatttattattattattattatttaacctTTGCTAGTAAAGTTGCAATTTCAAGAAGAATTTATGATCACAGGTGGAAACAGTTATTTATACACACg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168842 lncRNA upstream 336744 19308264 ~ 19309214 (+) True G114379
TU168830 lncRNA upstream 353077 19283778 ~ 19292881 (+) False fxyd3
TU168828 lncRNA upstream 362443 19280413 ~ 19283515 (+) True fxyd11
TU168807 lncRNA upstream 397638 19245933 ~ 19248320 (+) True G114345
TU168816 lncRNA upstream 439994 19202394 ~ 19205964 (+) True G114354
TU169042 lncRNA downstream 98 19647904 ~ 19648864 (+) True G114520
TU169094 lncRNA downstream 31577 19679383 ~ 19679686 (+) True G114556
TU169096 lncRNA downstream 34334 19682140 ~ 19682452 (+) True G114558
XR_006252841.1 lncRNA downstream 54919 19702725 ~ 19719929 (+) True LOC122360931
XR_006252843.1 lncRNA downstream 361747 20009553 ~ 20010093 (+) True LOC122360959
XM_043261216.1 mRNA upstream 2472 19499281 ~ 19643486 (+) False rims2a
XM_043261204.1 mRNA upstream 2472 19499281 ~ 19643486 (+) True rims2a
XM_043261208.1 mRNA upstream 2472 19499281 ~ 19643486 (+) False rims2a
XM_043261205.1 mRNA upstream 2472 19499281 ~ 19643486 (+) False rims2a
XM_043261209.1 mRNA upstream 2472 19499281 ~ 19643486 (+) False rims2a
XM_043262009.1 mRNA downstream 78350 19726156 ~ 19865094 (+) True zfpm2a
XM_043262010.1 mRNA downstream 78350 19726156 ~ 19865094 (+) False zfpm2a
XM_043262011.1 mRNA downstream 78350 19726156 ~ 19865094 (+) False zfpm2a
XM_043261807.1 mRNA downstream 249980 19897786 ~ 20012359 (+) True oxr1a
XM_043261810.1 mRNA downstream 249980 19897786 ~ 20012359 (+) False oxr1a
TU168846 other upstream 317195 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 392912 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 805730 18827254 ~ 18840228 (+) False LOC122360132
TU168577 other upstream 824822 18809154 ~ 18821136 (+) True LOC122360692
TU168569 other upstream 885056 18758384 ~ 18760902 (+) False LOC122359904
XR_006252832.1 other downstream 571838 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 1491075 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 2202183 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 2236123 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 2329311 21977117 ~ 21979368 (+) True G115193

Expression Profile