RNA id: TU169773


Basic Information

Item Value
RNA id TU169773
length 2384
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G114978
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21118149 ~ 21120532 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTTATTTGCGAATTagtacaaagttttttttcctcccatgTTAAAAATAGAACAGAGCATTAGTTACATCCTCTACTGTCTGGTTACACTGTGTAGTGTATTTGGGAAAGACAGAAGAGGGCAGAGCAGGcccccctcaaaaaaaaaaagacaatatttacACCCAGTCTCTCTCTGCCCCCTCGCCGTCTTAAGAAACAGTGCAACATTTAGGCATTTCACATCACTTTAAACATCCTCCACCTCTACTTCAGCAGCAGTAAGATACAGCAAGTTGAGAGCAGTATTTCACTTCAATACCGCATGCATCGGATCATGTCTAGGAATGTGCTCCTCTGGGAAGGGAGAGCGAGCAGTAAAATCAACACAATGGAGCTTGGTGCCATTTCAATCCTCGCAATAAAACAACTGCCATTGTATGTGGCAGCAACCCTGCCATCAAGTAAATGATGCTGTTCAGTATGGTCACGGAAATGATTATAAATCATTGTCTTCTCTCAGCACTCCGTTCTCATGTGGTTAATGCTTAATCTCGTCGTGTGACAAGGTTTAACCACTCATAAATAATTCGGAACTATTCCCAGCTGCTAGCCACACATTTGTTCTCGAGCGATAACTGGCCATACCTCATCACGTCATGGTGAAAATGATTGCTTTTTGCCATTTCTCTCATATTTGAGCATCCTTGCTCTACACTCAACAGCTGCACAGTCTGAAAGACCAGCTGGTCTCATGAAACTTCAGCCATATCAATGCCGCAATCACAAACCCACTGaaaaatgcacatacatacacttaaaaaaaaaaaaaaaaaaagtagtacaaTTGTTTTGACCAATGCTACTACATGGTTTCAAGCGTGTAGTTCATACAATTAAGTATTTTAACACCAGTTCTCTCATCAAcattattaactaatatttacaTTCGTAAAAGATGGCTAATAACGGACTGAGTCGTGCATTTCTATTGACATGATCAGATGGAAAACCATTTTCCTGTTGTGTTTTGGGGGCTATAGCTATATTGTTGCAAAAATCAATGCAAATCAATATGGGGAATCTATAAAAAGACAATATGCAATGGAACCAAACTTAatctttaaaagtttaaagcATCATGTTTCAAATTGATAAGTGGATAAGTGCAACAAAAACACCCAAGACTCGTATGCATTGAAAATGGGGACAATTTTGGTAGATTTTCTTACCAAACCATAAATCAAtatgcacaaagaaaaacacttgtCAGTGGAATGCACATTCAGTCAAACTTAAATAACGTGTAGAAAATGTtgtaaattaaacatatttaaatctcTGCTGCTGTctaatgaaaactaaaagaagTCTCtcagtgcattttaatatttaaatttcacTATGCACACATTAGTGTGGTTTCTGCAGAGCTGGATTGGATACACTAATGTtttatcatacacacacacgcacacactcacacttacaAACCGGGCCCAAATATACAGTAACAACTAATGGTCAACAATCTTAGAGAAACATGTAAACTGCTCATGGctctacaacaaaaaaaaagacattttaatacaggaaaataagaaaatatacacATCTAGTAATAAAAAGCAGCCCTGTCCATCAGATTTCAGCACAGAGAGACATTGAACTCCATCAGAGGGGTTCATGATCTGCTGcatttagatgcatttaaaatgactttggGTGAATCGTACTGATGGCTTCGCTAAAACGTACCTGGCACACAGGTGCTGTAGACATTAACCCTACTAAATGTTCAGGATTTCAGGAAACCGATATGACATCATAGCATGTGCCAAGGAATATTTTTCATGTGTTTAAGGCAGGACTGGAATGAGAACATCtccctttctcttttctctaGCCACCCTTCTTGCTGCCTAAAATCTGTCAGAAACTGACTTAACAACTTGATCATTATTTCGGTGTAAGTTagtcaaagcttttttttgtatattaaaatttatgACCACGGCTCCACTTTTACTTATCTATAAGCCAAGTTTCATATAAATTGTTAGAAATTtcactaataaataattgatttcaatattaaaaacagatcCCCCTCACCCCAGAGATTCAGACGTGTACAGTATGCTCTTACAAACACAACCATTCACAGAAACACAGCACCCAGTTCaaatttcaccccaaaatcaaaagaaaagaagaaatgatATGCTGCAAAAAGATTTTCCAGACAATTAAGCACCCTCTCCCAaattctttatattaaaaaaaatatataaatatatttaaaaaaacaacaacaaatatataaacttagTAATAATTAGTCCATAATTagataatttaaatgaaaataaatttagcGCAACAAATACTATCATGTAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252804.1 lncRNA upstream 188708 20928702 ~ 20929441 (+) True LOC122360417
TU169573 lncRNA upstream 350229 20767278 ~ 20767920 (+) False siglec15l
TU169531 lncRNA upstream 479509 20637446 ~ 20638640 (+) True G114826
TU169514 lncRNA upstream 531322 20586060 ~ 20586827 (+) True G114813
XR_006252845.1 lncRNA upstream 695960 20414210 ~ 20422189 (+) True LOC122360972
XR_006252821.1 lncRNA downstream 8596 21129128 ~ 21132105 (+) False LOC122360615
TU169784 lncRNA downstream 8745 21129277 ~ 21132102 (+) True LOC122360615
TU169778 lncRNA downstream 20510 21141042 ~ 21142030 (+) True G114983
TU169826 lncRNA downstream 47462 21167994 ~ 21169353 (+) True G115020
TU169926 lncRNA downstream 270249 21390781 ~ 21391162 (+) True G115074
XM_043261058.1 mRNA upstream 459 21107087 ~ 21117690 (+) True ptpn23a
XM_043261059.1 mRNA upstream 459 21109875 ~ 21117690 (+) False ptpn23a
XM_043261440.1 mRNA upstream 333708 20778080 ~ 20784441 (+) True cmtm6
XM_043260061.1 mRNA upstream 343771 20770464 ~ 20774378 (+) True cmtm7
XM_043260060.1 mRNA upstream 347757 20767348 ~ 20770392 (+) True siglec15l
XM_043260165.1 mRNA downstream 27225 21147757 ~ 21157049 (+) True kcnv1
XM_043262099.1 mRNA downstream 90320 21210852 ~ 21314454 (+) True si:dkey-22o22.2
XM_043260619.1 mRNA downstream 226125 21346657 ~ 21354616 (+) True ndufaf6
XM_043261013.1 mRNA downstream 244807 21365339 ~ 21378842 (+) True plekhf2
XM_043261817.1 mRNA downstream 272310 21392842 ~ 21405824 (+) False LOC122360960
XR_006252832.1 other upstream 891072 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 1470343 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 1789386 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 1865103 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 2277921 18827254 ~ 18840228 (+) False LOC122360132
unassigned_transcript_2160 other downstream 18349 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 729457 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 763397 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 856585 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 1789029 22909561 ~ 22911076 (+) False LOC122359863

Expression Profile