RNA id: TU170018


Basic Information

Item Value
RNA id TU170018
length 1871
RNA type TUCP
GC content 0.48
exon number 2
gene id G115149
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21801475 ~ 21803804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGCCAAAGTCATGGCGGCTGCCAGCTCCTCATAATGGGCGCTCACGGTCTGGTCGGTATCTGGGCACGCTTCCCTGAACCACCGCGTCATGCCAGCAGCTGGGGCTGCCCAGAAAATGCCAGTTGTTCACCCTGCCGCCATTTTCCCATCAGCCAACCCAGACGGCGACTTGCTTTGCGGGAATAAAAACAGGAGAGAAGAGATTAAAGGACTTGAGCGAAAGACTGGGAACTTAAACATGGCCAGATGACTCCAtcaatcaaaatgttttctccCGCCTCCCTTTCTTTCACTGCTTTATTCTATCCGATGTTAGAAACAAAGGGTTCGCTTCTGAATCATTCCCTTTTTCGGGGTTGGGTATTCTGGGAAAAGGGAATGGGCAGGGAAAATGGGGCAGAATCTGGCGTGGAAAAGATCCGAGCTGAGGATGCGTTTGAGATCACCAGCGCTCACCTCTCCTTCCCGAGGCCACGGCCGGCCGTTTTGAGGATACTTGCTCTGACTCTGCCTCTTCTTCTGTCCTCCGTCTGCAAACTTGCACAGCAGCGGCTCCGTCGGGGCTGTGAAGGAGAGGGAACAAACACAGAAGAATATAAAAGATCAGTCAGCTAGTCAGCAGGGCGTGAGAGGGAGGAGTGGACATATACCTCCATAGGTCAACCGCAGTACGATTGATGGAAAGGTCATGACCTCGGCAAAGAAAGTGGAGTGTGTTTTGAACAGAGAGGGAAATGTTACACCGCAGGTATCACACCCACACCGAACCCACAGAGTGGCGGAGGAATATCCAATGACCTTTTGAAGTTCAACACCCCTCGACTATCTCCCCTCGACTTCCTGCACCCCCTCCTGCCTCTCTTTCCATTATGTCTTCAACACTCAGACCATCGGCTCCACTTTTGGCACGGACGTCCTCTCAATTCCCAACCATCAAAACAGCTACCCTGGCAGGTCTTCAAGGCATCGTTTAATATTTGCGCAATAATAAACGGTCTGATGACGAAAGTAAATAACTGAAACGCTGCTGAGTGCACCAACTGAAAAGTTTCGAAATatcgttttttttgtgtgtttggtgttCAAGTATCTCGCTTATGATCTCTTACCACACGGacgaaaaaactaaacaaaaaaacgtcaAAGGCTCCTCTACGACCCTGAGGGGCCGGTTCACGCGAAAGGCGCACGGAGTGTTCTAAAGAGTTCTCTTCCAAAAGTGCAAAGCAGGATGGCAAGCGCTGAGGCGAAACACTTCCAATGTTCTCGCTCAGTCATGACGGCAATATGAATTGCAGGGTGTGGAGCACCTCTCTGAAGTCTATGAACGCACTTGAGGAGCAGGAAATTTTGCTCTCCAGTTGAACAAATTCCTGTACGCCACAGCTAAGCTAAACTTAATTTGGTTTCCTCGGCAACcagaaaaactcatttaaagCGAGCGCAAACTTCTTGGATGATGGGATCTGGCAGAGAGCGATGATAGATGCAGGAGGAGGAGTTTTTGCTTTGTGGAGTCCAGACAACTATTCTGAGTAATCCTGCCCTCCGGCGATATGACTCTACAGTCACCTCTGAAAGTATGTTAGTTTGGCAGAGAAAAATGAACACTTTCTCTTCCGCACGCTCTCACCTGCACTGCGATATTTCAGCAGCTCTGTGGAACAATAGAAGGCGGTTGTATCACAGACTGCAGAGGATGCGCTGTGCGTAAATAAGCGCATATATTGCATGGAACCAGataaacaaattcaaaacaagCAGCTGAAACGGCTCAGCGGAACATTATGTATTCTGTAGCCGAATAGAATATTTAATGGctgttgtttgttcttttttgtcTATTGTTTAGAATGAGACATCAAACA

Function

GO: NA

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169974 lncRNA downstream 187296 21605980 ~ 21614179 (-) False cenpw
TU169954 lncRNA downstream 412328 21388815 ~ 21389147 (-) True G115098
TU169865 lncRNA downstream 470117 21331012 ~ 21331358 (-) True G115051
TU169853 lncRNA downstream 486729 21283464 ~ 21314746 (-) True G115042
TU169793 lncRNA downstream 680891 21118149 ~ 21120584 (-) True G114997
TU170024 lncRNA upstream 21394 21825198 ~ 21825437 (-) True G115155
TU170039 lncRNA upstream 70022 21873826 ~ 21874051 (-) True G115170
TU170171 lncRNA upstream 426436 22230240 ~ 22237066 (-) True G115262
TU170280 lncRNA upstream 879623 22683427 ~ 22683638 (-) True G115335
TU170525 lncRNA upstream 969962 22773766 ~ 22774032 (-) True G115496
XM_043260130.1 mRNA downstream 144755 21654319 ~ 21656720 (-) True hint3
XM_043260042.1 mRNA downstream 150364 21640097 ~ 21651111 (-) True trmt11
XM_043261465.1 mRNA downstream 187272 21605958 ~ 21614203 (-) True cenpw
XM_043260090.1 mRNA downstream 369668 21412868 ~ 21431807 (-) True rspo3
XM_043261791.1 mRNA upstream 119158 21922962 ~ 21961491 (-) False osbpl10b
XM_043261790.1 mRNA upstream 119158 21922962 ~ 21961491 (-) True osbpl10b
XM_043261479.1 mRNA upstream 165033 21968837 ~ 21970707 (-) True kiaa1143
XM_043260809.1 mRNA upstream 168868 21972672 ~ 21982802 (-) False zdhhc3a
XM_043260810.1 mRNA upstream 170688 21974492 ~ 21982803 (-) True zdhhc3a
TU170010 other downstream 96516 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 240259 21560221 ~ 21561216 (-) False G115116
TU169979 other downstream 240415 21560221 ~ 21561060 (-) True G115116
XR_006252759.1 other downstream 389703 21410291 ~ 21411772 (-) False mettl6
unassigned_transcript_2162 other downstream 391444 21409960 ~ 21410031 (-) True trnae-cuc_38
TU170105 other upstream 161051 21964855 ~ 21968535 (-) True G115207
TU170138 other upstream 283845 22087649 ~ 22089054 (-) False eny2
TU170599 other upstream 1128823 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 1716004 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 1784381 23588185 ~ 23609841 (-) False usp45

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU107194 True 1009 lncRNA 0.38 2 CI01000016 976880 ~ 978159 (-)