RNA id: TU170042


Basic Information

Item Value
RNA id TU170042
length 1938
RNA type TUCP
GC content 0.39
exon number 2
gene id stt3b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21883909 ~ 21921531 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGGTCTCGTGTGCCGAGTGGTACAAGCCGGTTAGCATGCCACTCAGACGCGGAATCTACTGCAAATAAATCCAGATTGTTCACACACAACGCCGAATACCTGCAGTTGGAGCGAAGGCCTGGTTGCGCAGAAATATTGGCGCCGAGGAGGGAGCGGGTTGGTGGAAAGAGGGGTGCGTGGCGGTGGGAAGTGCTCTTCTAACCAAATCCTCCAGAACATGGCGGAGCACCACACCGCCTCCGACTGCAAGCACAAAGCCAGCTCCAACGCCGGAGGTTCGGTCTCGGGCAACGGACGGCCCAACTCCCCGGCTGGATGCGGCGGCAGCGGAGGAGGCCTGTCCGGGGGACTGACGCAGCCGGCGGGATGGCAGTCTTTGCTGTCGTTCACTATTCTCTTTCTGGCCTGGTTGGCAGGGTTCAGCTCGCGACTTTTCGCTGTTATTCGCTTCGAGAGCATCATTCACGAGTTCGACCCTTGaGTTCGGGTCAGCAGCGGATCCATTGATGCAAAAGGATATACTTGAATTGCTAAATTTCAAAGTCTACATTCTCATTTGATGTATTCAGAGCAGCTCATGTGCTTGCTTTTACTTGCAGATTGTGTctaactgatttatttaaaaatgtatcacctaaatgtattttagatttGTACGTCGTATAACCTTTTGTTAATTGTGTACCTTGTATGATTTATTCAGAGTTCACCATGCTGGCatggcattaaaaataaaaatacaattacttGCAGGTTAATTTGGTAACACTAACagttgcaatattttaataaaattattggtACATTTTATAATTGGTATTAATACAAGCTGATAGCTAATATAGTTGAAacctaaagtgttaccatgaaTTTTTATCATACGCCAATCATTATTACTGACATGGTCTCATTTTcactaacattttaaaacaccagCAAGTCCAGATAATTAATTCAGATTGATTAACATCTCAAGCAAATGTGatgtattgttgttttttttaaaggtcagagtttatttacattcatagcaaataaaatgtgttacaaTCAATTTACGCAAAtgacatttgtaaataattatatttcagctGGACAGGAAAATAAAGTGGCTGGAGTGAGCTGTGCAGCGTGACCAAAATTGAAATGCAGTATCCCCGAATTTCAAGTTTAAATGCCTTCATTGATTGCAATGCGAACGATCTAGTCTTGTTCAAGCCAGTCAAGCCAAAAATGAGCCGTTGTGGTCCTTTGGTTCTTGGTTTGAGACCAGCAGTTAAAGAGGTTTGGTGCAGAGCCATGTATTTTGGCCCACAACCTCATTCTCTTTGTTGGAAACTAGGTGTGCGTAAATGATAGACACAAATAGAAATATTCTTTCACCGGCATCTGTTTATACCACGTTTAATTGTGCTTGcttatttctttctatttataTTACTTGTCGTTGTCTAATGGTCAATTGGTTATTCTATAAAAAACACTAATgttcattgttgttgttattattaccaAATCTCCAAATACAAATCAAATCTGTACATTATAATTCACTTGTAGCTTTTACAGCAATTGACTTCAGAATAGATTTTAGTAttccattgtttttattttgacaacaCAATagagaatttacatttttataaagagcctacataaaaacaattaccAACTTATTAAATTGGCCTGAATGCAATGtcagtgcacaaaaaaaaattatcctttTGAAATGGAAGAGAATTTACAGTCAGTTTCTTCTGAAATTAAAGACATTTGGATTCTCATCCTTGTCTTTTACGGGGTTGAGTATTCTGCAAAGCACCAGCACTCACTTTTACTCCCTGACATATTTAATGCACACGGAGACAGCGCATCTCATTTTATAAACCATAACTCTTTTCCATATATTATTCAGCCATCAGACCTCTTTCTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170026 lncRNA upstream 54398 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 189385 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 492767 21390781 ~ 21391162 (+) True G115074
TU169826 lncRNA upstream 714576 21167994 ~ 21169353 (+) True G115020
TU169778 lncRNA upstream 741899 21141042 ~ 21142030 (+) True G114983
TU170090 lncRNA downstream 102478 21997010 ~ 22001617 (+) True G115200
TU170216 lncRNA downstream 632625 22527157 ~ 22530262 (+) True G115288
TU170288 lncRNA downstream 872969 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 1088529 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 1104917 22999449 ~ 23003110 (+) True LOC122359996
XM_043261176.1 mRNA upstream 10957 21849989 ~ 21872972 (+) True tgfbr2b
XM_043260602.1 mRNA upstream 61456 21703724 ~ 21822473 (+) False rbms3
XM_043261480.1 mRNA downstream 67688 21962220 ~ 21968547 (+) True gpd1l
XM_043260812.1 mRNA downstream 76690 21971222 ~ 21972500 (+) True tmem42a
XM_043260811.1 mRNA downstream 89358 21983890 ~ 21989916 (+) True ebag9
XM_043260213.1 mRNA downstream 109703 22004235 ~ 22010159 (+) True gdf6a
XM_043260421.1 mRNA downstream 242036 22136568 ~ 22139827 (+) True LOC122360094
XR_006252812.1 other upstream 10957 21849989 ~ 21872972 (+) False tgfbr2b
unassigned_transcript_2160 other upstream 744977 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 1656852 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 2236123 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 2555166 19327104 ~ 19328763 (+) True G114382
TU170081 other downstream 82585 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 1015029 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 1070037 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 1215751 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 1270034 23164566 ~ 23166279 (+) False wnt4b

Expression Profile