RNA id: TU170404


Basic Information

Item Value
RNA id TU170404
length 772
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G115420
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23108123 ~ 23109033 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCGTCCTCGCAATCAAAGCTTTCTTCTAGGTCCAAATGTATGAGAGTGAGCGTGATTTTGTGTCCGGTCGTAGCACACTTTTTCCAGGTCATGTTAGAATGGGGCTCGTACCCTCGTGGATATCCAGGTGACTGCACCCATCCAGCCAAAGCCACTGACCCACACACAGGAAGAAGGAGGACAATAACaccAAAAAACAATCATGATTACAAGTGTTAAAACGCAGCCCGCCCTCTCCTTCTGCACTTTCACTTTCATGCTCTTCGTGCATCATCATGTCCAGCCCTCTTTTCCCCTAAAAACAAAAGTCAACTTACTCAAACTGGATGTTTCCCAACACTTGTCAGTGGGCGTTCACCTTGAACTGATGTGAACCGGAGGGCAGATATTTAGTGACTGCTCCAGACAGACTGTTGTGGGGTATACGTCATACtaacattaataatgcattaatttaaagcatatttagttaaaaataaatacataattcaaatactaaatgagtaaataaataagaaagtcAACATCTTTACTAATACAAACACTATTTCAGTTAACTGACAAGTGACAACTTATGCATATGAGCCAGAAGCACATTGGTTACAGTACAATGCTGAAACCCCCGGATACACATATAAGCGCACTTATAACTtatacctatatcctgcactttctgcttattgcactcctggacAGTATGCTGCCTGGCGTCAGAaatggaaaacaataaaaagtaattgaggaggagaagagagcaAAAAGAGAGATG

Function

GO:

id name namespace
GO:0000041 transition metal ion transport biological_process
GO:0006826 iron ion transport biological_process

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170397 lncRNA upstream 12713 23091343 ~ 23095410 (+) False G115416
TU170399 lncRNA upstream 12713 23091628 ~ 23095410 (+) True G115416
TU170340 lncRNA upstream 30247 23052420 ~ 23077876 (+) False G115371
TU170341 lncRNA upstream 30247 23052420 ~ 23077876 (+) True G115371
TU170358 lncRNA upstream 98288 23008604 ~ 23009835 (+) True G115384
TU170408 lncRNA downstream 32040 23141073 ~ 23143458 (+) True G115422
TU170465 lncRNA downstream 156439 23265472 ~ 23266469 (+) True G115462
TU170475 lncRNA downstream 165956 23274989 ~ 23358779 (+) False LOC122360149
TU170473 lncRNA downstream 212304 23321337 ~ 23358779 (+) False LOC122360149
TU170819 lncRNA downstream 426447 23535480 ~ 23559924 (+) True G115706
XM_043261709.1 mRNA upstream 55063 23030988 ~ 23053060 (+) True LOC122360866
XM_043261708.1 mRNA upstream 99664 23004912 ~ 23008459 (+) True LOC122360864
XM_043260385.1 mRNA upstream 132349 22964619 ~ 22975774 (+) True LOC122360067
XM_043260055.1 mRNA upstream 174141 22930421 ~ 22933982 (+) True LOC122359865
XM_043260616.1 mRNA downstream 1272 23110305 ~ 23116815 (+) True LOC122360203
XM_043260464.1 mRNA downstream 56398 23165431 ~ 23169677 (+) True wnt4b
XM_043260461.1 mRNA downstream 67791 23176824 ~ 23181429 (+) True mlf2
XM_043260462.1 mRNA downstream 67791 23176824 ~ 23181429 (+) False mlf2
XM_043261781.1 mRNA downstream 75995 23185028 ~ 23197722 (+) True atn1
TU170371 other upstream 137597 22964569 ~ 22970526 (+) False LOC122360067
TU170321 other upstream 197047 22909561 ~ 22911076 (+) False LOC122359863
TU170081 other upstream 1128755 21977117 ~ 21979368 (+) True G115193
TU170042 other upstream 1213591 21883929 ~ 21894532 (+) False stt3b
XR_006252812.1 other upstream 1235151 21849989 ~ 21872972 (+) False tgfbr2b
TU170363 other downstream 1250 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 55533 23164566 ~ 23166279 (+) False wnt4b
XR_006252835.1 other downstream 113024 23222057 ~ 23223731 (+) False rps9
TU170450 other downstream 142349 23251382 ~ 23254566 (+) True G115449
TU171329 other downstream 1894229 25003262 ~ 25057168 (+) True G116057

Expression Profile