RNA id: TU171699


Basic Information

Item Value
RNA id TU171699
length 2881
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G116294
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26069855 ~ 26073277 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatatatataaataatgtttattttacttcaggtaattatttttgttatttgttttagttgaaTATAATATccctggtaaaaaaaaaaaaaaataaataaaaaactgagaCGTAGACATCATTCAAATGCTAAAAACTATTTGACCTTGCAAAAATGGCTTTTAGAAAAGAAACCTAATGCTTTGACATGAAGACGTTTAAATGACGTTTAAGCgtctaaatacttttttctgCCTCTGCGTGAGGTTTGATTTCAAGCACAAAAGCAGGTGATTTTTTCCCGATGTTCCCCTCGTCTCTTAAGCTTTTTATCCTGCTGTCAGTCCGCTCTTTCCTCATCGAGCTCACGTTAGCATCGCCCTCGAGGCCCGCCGATCATCTCTGTGTACACGTATTCTCCTCAAATataagtaaaacaaaagaaaaaaacagtatgaAATGTTGTTGCAATTCTCGGTGTGGGTATAACGCatgtaaatgtctgttttgGGTGGAGTTTCTATGGATGTGTGACTATCGTGACGGAGCGCTGCTGGCGCCGGGATCATGTCCCCTCGTGATTCCCGCGCTCTCTCTTTCAGAGGGGACTGAGATAGAGGTCTGGTGTGGGACGGGGCTCTTAGTGCCGGATGAGGAAGTCTGTTTCTGCCACTAAATATCCCCTAGACATGTAAACTTCTGACTAGATATAAcctcagaattgtgaaaaaCGAGCtctgaattcttttttttttctcggaaTGCAGAATTTGCATCTcacaactttattttttcagtttttgttatcGCAAGTTCATTCCGACTTCTCATTACAGctagttatttcttttttcttttccttttttaattgcAAGTATGCAATTTTTTTCGTCCCGTTGAAGCTCACATCCTgcagcttttctcttttttttctcagatttacctcattttttactttttctcagaattccacaattttgagtttatatcttgaAATCGTGAGAGATGTtacttttttcctcaaaatattttatttagttttttgtttagtttatagctcgattctcattttttttcctcagaattaaaaatgtatatttcataattcagattttttttattccttgcGATTCTAAAATTACATCTAATTgccattaattatttatttttttatttttttaaatccgtgtatacataaaaaatatatatataactcagaattgtgatgaaaaaaaacatcagacatGTAAGATAAAATTATTAGCTTTTCTATTCTCTCATATTTTGTGACGGAAACAAGACACTGACCGCTTGTGAAGAGCATTTTCTAGCTTTCAGACCCAGCCAGAGCAGAGCGAATCAAGGCACACAGAAAACGCGGCGTTCGTCTAACAGGAAAACTAGctgtgaaaaatatttgaattaaatcaCAAACTCAAATAAAACTCTGCCCAACAAACCCTgcttgtaaaatgcattttctgtccGTTTCCCAAACACTTCCCTCGTCTGTGTTTACGAACGGCTTGCTTATAGTTGCCTGCGCGTATTAAACCCGAGATGGAAGGAAGTAGTTGAACGGTTCACCTCCAAATATTTGCTTGATTATCTCTATAACCCCTTCAGGTTTGCTCTGGGTCATTGCACAAGATGTTACGGCGCTTTAGTTCGGGGTTTGCTTCGACTTTGGAGGTGCTTTAATACAAAACTCGGCGACTTGACAGTAAAAATCGGGATGCTTTTTAATTGCAGCTCAAGTCTGCCAATATAAAAGTGGATTCGTGCCAGATTAGATGCCAGTGCTGCTGACTAATTATCATTTGTCGTTgacagtaaaaattaatttatccATTTGGCCACTAGATGGCGGTGTCAAATCACTCTGCACCACGCTTTTAGTATTTCATCGCACACTGCGCGTTTAATTCACCAAAAAGTGCACAAATAGCCCTCCGTGGTCGTTAGCATATGCATCTGTTGCATCTCATTTAATTAGGAACCGAAGGTAACCGAGGTTGCGATATTTGTCGCATTTTTACTGGAACGGGTTCACACGACCTCTCAGAAACCAGCCTGGCGTGCAGAAAGCAGGCAGTTTAAAGTCGCTTTTTAGTGTTGCACGAGTTTCTGTTAGTGTTGCGTTAGCCGATGCCACTGAAATACGCGaaacaaacaacacagaacTGAATGTCAGTGTCTATTGATACTGTGTATCTGGAGACGGTGTGCACGTGGAAGCAGGCGGATAGTTAGCGGTCAGATGCTGTGTGCAAAGAATACAAGCTTGTTATCGGTACTGTGTATCACTGATGTCGCGGGATTGTTACAAATTCAGGAGAAATGTAAAAGCGCTTCAGGCCAGAGAGAAACGCACGCAGACGCGGATGTCTGGTGTTATTGAGGCGCTTAGCTACAAACGTCAACGGTTTACTTCACTTTCTCGACAACGTTGCCTCACCGCGAGCGAGAAAGATGACCGCAGAGAACCTTGTGTTGTCTGGTCGGGTCTGGCTATGAAACGTGTTCGCTTTTTAGAGAAGGGGTTTGAGTCGAAGGAGACCCAAAAAAAAGATACGCTCGattaaaatgtgtgcatttagGATTGGCGTATTTGAATTTCGCGTGCTCGGTTCATGCATTGATCAGCAACGAGGCtcatttatttcacacatttgATAGCGGTGATAGTGATAGGGCCACATTTTAACCATGTTCATGCTTTTCGTCGGATTAAAtgcgttttaaaaatatgatccTTAGAATCCTTAgaatttttcttaaaatcaaattacattagagaatgaaagtaaaacaattgagcttctaaaatgttttatttctgaaacactgaactaaaattacaaaatttaaatatatatatatatatacaactaCTAAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252831.1 lncRNA upstream 281177 25782022 ~ 25788678 (+) True LOC122360700
TU171460 lncRNA upstream 291448 25767565 ~ 25778407 (+) False G116141
TU171466 lncRNA upstream 291448 25775923 ~ 25778407 (+) False G116141
TU171468 lncRNA upstream 300259 25762571 ~ 25769596 (+) True G116141
TU171471 lncRNA upstream 338204 25731186 ~ 25731651 (+) True G116143
TU171696 lncRNA downstream 82 26073359 ~ 26074410 (+) True G116293
TU171712 lncRNA downstream 31741 26105018 ~ 26178239 (+) True G116300
TU171713 lncRNA downstream 88380 26161657 ~ 26178239 (+) False G116300
TU171766 lncRNA downstream 143656 26216933 ~ 26224224 (+) False LOC122359920
XR_006252736.1 lncRNA downstream 143810 26217087 ~ 26226081 (+) False LOC122359920
XM_043261926.1 mRNA upstream 323 25897222 ~ 26069532 (+) True iglon5
XM_043261548.1 mRNA upstream 291449 25776756 ~ 25778406 (+) True LOC122360721
XM_043261550.1 mRNA upstream 291449 25776756 ~ 25778406 (+) False LOC122360721
XM_043261547.1 mRNA upstream 300249 25752266 ~ 25769606 (+) False LOC122360719
XM_043260365.1 mRNA downstream 47583 26120860 ~ 26125250 (+) True LOC122360056
XM_043260362.1 mRNA downstream 52099 26125376 ~ 26130807 (+) True si:dkeyp-97a10.2
XM_043260364.1 mRNA downstream 52099 26125376 ~ 26129586 (+) False si:dkeyp-97a10.2
XM_043260363.1 mRNA downstream 52107 26125384 ~ 26130807 (+) False si:dkeyp-97a10.2
XM_043260129.1 mRNA downstream 132213 26205490 ~ 26211403 (+) True dhdds
TU171463 other upstream 291448 25718520 ~ 25778407 (+) False G116141
TU171398 other upstream 515048 25552863 ~ 25554807 (+) True G116099
TU171329 other upstream 1012687 25003262 ~ 25057168 (+) True G116057
TU170450 other upstream 2815289 23251382 ~ 23254566 (+) True G115449
XR_006252835.1 other upstream 2846124 23222057 ~ 23223731 (+) False rps9
TU171760 other downstream 139534 26212811 ~ 26215779 (+) False hmgn2
TU171761 other downstream 139534 26212811 ~ 26215779 (+) False hmgn2
TU171947 other downstream 768103 26841380 ~ 26842025 (+) True G116445
TU171967 other downstream 822161 26895438 ~ 27171468 (+) True G116459
TU171968 other downstream 1090559 27163836 ~ 27168738 (+) True G116460

Expression Profile