RNA id: XM_043260352.1


Basic Information

Item Value
RNA id XM_043260352.1
length 2726
RNA type mRNA
GC content 0.46
exon number 5
gene id rspo2
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22261301 ~ 22313025 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCCCTCTCTCCGATCGAGGGGCTTCTGAAAGTGCTCCGAAAAGCCCCACAAGATCTTGGAGTCTCCACGTGACAGCAGCGCCTATATAGCATCAGCACCAGTAGAGTGATACTCCATCACCAACCGAGCGCCGCAGCATATGCCACAGTTACACACACATCCTCACGCACCTCAAGGGTTTATTCTAGAGCTTTTGCAGACTATTGCATCCATGTGTTTTCTCGCTCTGTCTAGGGGACGAAGGGACTAAACTTTTCCTGCGAGAGGGATGCTGGATGTTCCAAGTCCGCTTTGGCAGTCGGAAGGAACTTGATGTATAGGCaaagtttctctttttttggacTGGACCCGCGCAGGTATATTTCTTTCGCTCCTCTCGTCTACTTTTGAGGGCACCCGCCGCGTCTCGTGCGCTTTTGGAGATTCGCTGATTCAAGATCTTTTGAATGAAACCGTTCGTCCGCAAACCACGTTGATCCACCAAGGTGCATTTGTTACTCAACCGACCTCAagttaaaagctttttctctctccacagACAATAACGAGACACTTTTTAGGGTATAAAAAGTGCGTTTCGctctctaaaatgacattaaccGGTGGTGAAAGATGGTGTTTTCTCTACCCCTCTAATGTGTGACACAGCTGAGTCCGGACTCCTCAACTCTCCGCTTCTCTGtggaaaaatatacatattgaAACCTCATATACGGACCTTGCAGGCTCGCGGCGAGTACCTTTGACGCTTTCTACCGTGAGTAGGGACAATCACACAGCCGCCCAGATGCAGTTTCGTCTGTTCTCATTTGCGCTGATCGTGTTGAACTGTGTGGACTACAGCCACTGTCAGACGCAGCAGTCTCACCGCTGGAGAAGAAACAAAAGAGCTAGCTATGGAGCTTATCCCATCTGTAAAGGCTGCTCGGTGTGTTCCAAGGACAACGGGTGTATGAACTGCCAACCCAAGCTCTTCCTGTTCCTGAGGAGGGAGAGGATGAGGCAGTATGGCGAGTGTCTCCATGCCTGTCCTTCAGGCTACTATGGCATGCGCGGGACAGAGATCAACATGTGCGCCAGGTGTAGGATAGATAACTGTGAGGCCTGCTTCAGCAAAGACTTCTGCACAAAGTGCAAGCCTGGTTTTTACTTGCACAAGGGCCGGTGCTACGAAAAGTGTCCAGAGGGCTTTGCTCCCCTGGAGGACAGCATGGAGTGTGGAGAGGGCTGTGAGGTGGGCCAGTGGAGTGAGTGGGGGACCTGTACCAGAAGAAACAAAACCTGTGGTTTCAAGTGGGGTCTGGAAACCCGAACACGGCATATTGTGAAGAAGCCACCAAAGGACACGATACCATGTCCAACCATCGCCGAGTCCAGGAGATGCAAAATGGCAATGCGACATTGCAGAAAAGGGGGTTCGGGGAAAGGCCACCGAACCAAAGACCAGAAGAAGAAGTCCAACAAGCAGAGGCTGCGCTTCCGGGCTCAGAACCAACACAGCGACCACCTCGCCTCTCTTCGAGCCAgccagtaaaaataaataaataaataaataaaaaatagaaagagcgagagagagacatttCGATGGAACAAAGACCACAAAGCTGCTAACCCATGCTCCACACACACCTACCCTGATGAAAACACAAGTCGCGCATCCAAACGGGATTATTCACACTCATGTGGTCACACTGTGTCTCTGTGCCTCCTGCTGCTTCCCTCACCGGTGACACGTCCCCCCCGACCCGTGACCCCACTGTGATATCATGGAACACTATAGCAGCTGTTCATATAGCTCATaactgaggaggaagaagagagagactGAGCTGGAAGCACAGAAAGCTTGGGCCTGGAGACCTGGAGGAGTCGAACGAGCACAGAGTGGCGAAAGGAGCAGAAGGGATTAGAAACGTGATTGACTGATAATGATGCCCtgaaaaacaagagagagaCTTATCTGTATTTATGTACAATTTACACCATCCCCTTCCCTTATGAAATCAAGGCAGCGTGTGTCATGTATTGCCTTTCTTGTCCAATAGGTACTTTGTTTTTCACAGCAATGTTGCAAACCATGCATAGTTGCGAAATTATTATTCTCAGCACAAGATGTTTACGTCCAGACCGCTTTATGCTTTGACTGTATATTGTGGGTAAGAATCTTAGTTGTTCAACTAGCATGGCCACAAACTCATGTGTACATAGTTGGTGAGTTTATCTAATAACGGTAACATTGacgataaatatatatataaaaaattactgtattttcagtATTGACACCTTCAGAGTTTAAATGTGTAAAGGGTTATAATACCAGCTACagttaaatgaatttaaaaagaacaaaaagctaaataaaaagcatagcCTCCACATAGCTATTACATTTATATGgtatataattgatttatttattgatctttttttattattattattattatttttatgtttggtgAAAATGATGTCTCTGTACCTGATACTCCTCAGTGCTGAAGTATTTTTTCAACCACTTATGACAATACAAAATATCTCCAACAGTAGACAGCGATTGCGTCCGTTTTGCCGATAAATGTCCTTCAGAAAATCATTGTGTAAACCTGGTTTAGCATCTTGTACTTTATGTTGATCACACATCCCGCAGCAGCTGAAGTATATCGTCAACTGATTGataatgtgtatattgtgtGCTAATAAAACGCAGTTCATGTTGCA

Function

GO: NA

KEGG:

id description
K23097 RSPO2; R-spondin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170090 lncRNA upstream 259684 21997010 ~ 22001617 (+) True G115200
TU170026 lncRNA upstream 431770 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 566757 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 870139 21390781 ~ 21391162 (+) True G115074
TU169826 lncRNA upstream 1091948 21167994 ~ 21169353 (+) True G115020
TU170216 lncRNA downstream 214132 22527157 ~ 22530262 (+) True G115288
TU170288 lncRNA downstream 454476 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 670036 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 686424 22999449 ~ 23003110 (+) True LOC122359996
TU170358 lncRNA downstream 695579 23008604 ~ 23009835 (+) True G115384
XM_043261628.1 mRNA upstream 2535 22220874 ~ 22258766 (+) True eif3ea
XM_043260421.1 mRNA upstream 121474 22136568 ~ 22139827 (+) True LOC122360094
XM_043260213.1 mRNA upstream 251142 22004235 ~ 22010159 (+) True gdf6a
XM_043260811.1 mRNA upstream 271385 21983890 ~ 21989916 (+) True ebag9
XM_043260812.1 mRNA upstream 288801 21971222 ~ 21972500 (+) True tmem42a
XM_043261393.1 mRNA downstream 240738 22553763 ~ 22639975 (+) True adgrb1a
XM_043261396.1 mRNA downstream 240738 22553763 ~ 22639975 (+) False adgrb1a
XM_043261400.1 mRNA downstream 240738 22553763 ~ 22639975 (+) False adgrb1a
XM_043261397.1 mRNA downstream 240739 22553764 ~ 22639975 (+) False adgrb1a
XM_043261403.1 mRNA downstream 240739 22553764 ~ 22639975 (+) False adgrb1a
TU170081 other upstream 281933 21977117 ~ 21979368 (+) True G115193
TU170042 other upstream 366769 21883929 ~ 21894532 (+) False stt3b
XR_006252812.1 other upstream 388329 21849989 ~ 21872972 (+) False tgfbr2b
unassigned_transcript_2160 other upstream 1122349 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 2034224 20219644 ~ 20227077 (+) False hjv
TU170321 other downstream 596536 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 651544 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 797258 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 851541 23164566 ~ 23166279 (+) False wnt4b
XR_006252835.1 other downstream 909032 23222057 ~ 23223731 (+) False rps9

Expression Profile