RNA id: XM_043260579.1


Basic Information

Item Value
RNA id XM_043260579.1
length 2141
RNA type mRNA
GC content 0.44
exon number 10
gene id bnipl
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22880673 ~ 22890683 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTACATTGCTATAACCAACATCAGTAGCCTATAATAAATCAGTTTAACTAGCGCTTGTAACGTTTTTAcgatatgtatgtgtattttttttattaaatgaaaaggcGGTTTGTTTTTGAGACGCATTTTCCGTACGAGGTTAGTGAAAAGGCATTCAGAAAGCAGCAAGACATCGGCCTTCATCCCTGACATGGAGCTCCGGGAGGAATGGCAGGATGAAGAGTTCCCCAGACCTCTTCCTGAGGACACACACAGTCCTGGTGATGAAGAGGAAAGCCCTGGAGCTGAGGGAAACAGACCTGtcCCACCGACTAGCCTGGCCCTTACAGGTGATACCGTCAGGAAGAAGCGACTAGTAGCGCCAACTCTTAGTTTAACACTGGACAAAACCTCTACTGACCGGAGCATGAAGTCTGACGAGTTCGATGCCTCTGCTCTTTCACCATCTCCTGACGATGACCTAGAGATGGACATTAACCTGGAAGCCCTAGAGACACCCTCAGACAGCGAGTCTTACAATTTCCCAGACAGCATGCATGACTTAGAGTGGGAAGATGATCTTCCAAGGATGGGCAAAGCAGCCATCAGAAAAGCCAGTTTACTCGAGCACGCGGAAATGGGACACCTGGACTTGGATCAGGTGGACAGCAGTGGGCGGCGATGGAGGCGATTTCATATTGGAGGCCAAGACTACCAAGTCAATATGAGCGTTCTGGAGCCCTACCTTCAAGTTCTTTCACATGGAGGATATTTTGGGGACGGATCAACGGCCATCATCATGTTTACTTCCTGTTACCTACCAGAAAATACAACCGAACACTATGAGTATGTGATGGACAATCTCTTCAGGTACATTATCGGCACGCTGGACTTGATGGTGTCTGAGAATTACATATTGGTGTATCTGTGTGGAATGGCGCCTCGCAATAAGATGCCTGGGATTAAGTGGCTTCGCCAGTGTTACATGTCCATCGACAGAAGgTTAAGGAAAGACTTGAAAGGCCTTTTCGTGGTTCACCCGGCCTGGTACGTGAGAGCGCTAATCACCGTCATCAAACCCTTTATCAGTGAGAAATTCAGCAGGAAGATGCGCTTCATCCACAGCTTGCAAGAACTGGCAGAGTTTGTTCCTGTGGCCCAGCTGCAAATCCCAGACTGCATCAGACAGTATGATGAGCAGATGAACAGGTGAAGGTGTCTGACGGGAAGAGAGCAGAGGTGTACATACTGTATAGACTTCACACCGGGGTGACATGCATGTGGGAATTGGAGCTGACTAGGGTTACAGGTCAAGCTTGAGGGCAAATGCCTTAATGACAGAAAAACAGCTTCCTACCACACGACTCTTTgatgaaatacaaaaagacaGTGTTGTCCTTCAGAGAGAGGCAGCTGTGTCACGCTGCAAGGTGGGTCAGGAGAGGTCTGTGAGCAACATGAAAGCCTCTTTGACGTCATCGCGTTTAAACTGttacacaaaaacagacaaacatgtTTCCCAGACTGTAGAAACTCACATAATGCACCCTTTACCTACTGTGTTTAGGCCTGAGAAATCCCGCTAACGTTTCCTTTTGGACTTGTGGTAATCATACCCAAATTAGTTTTGATATTTGCACTAAATAGTTACAAAATCTTGTTGTATGCATGCTACCTGAAACCTGTATGAACCTGTGTTTAAGTGCTTCAAACTACTATCTGGCTTTTTCGAAATAAGTCTTGTAAAGTGGTATCGACTCtctattttattgaaatatataagtttttatatattctgtaaaatgCATTGTACTTGAgcatttaatgtatgtttaatgtaTGTAAGCACAATCAAATCAGagctattaaaaacaaatggtgTGTGTAATGTTGCTGTAAGAAGCCGCATTGGTCagtttatactgtacatacttGTCACTTATAATCATGCCTGGTTTTCTTCTTGGGAAATGTTCTCTAATATttagctgctgctgctgcctgTATAGTGGCCCATTGAATGTGCTTTCATTTAATAGACTCCTATgtgcaaatatttatacaaGGCCACACTTGAACAACCGGAGCTTTAAAACGGCACATAATACATGTATATCTTTTTCCATGATATTTAAGGAAATAAAGGGTTATATTAAACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170288 lncRNA upstream 114637 22767501 ~ 22768460 (+) True G115342
TU170216 lncRNA upstream 352835 22527157 ~ 22530262 (+) True G115288
TU170090 lncRNA upstream 881480 21997010 ~ 22001617 (+) True G115200
TU170026 lncRNA upstream 1053566 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 1188553 21693494 ~ 21694544 (+) True G115134
TU170376 lncRNA downstream 92378 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 108766 22999449 ~ 23003110 (+) True LOC122359996
TU170358 lncRNA downstream 117921 23008604 ~ 23009835 (+) True G115384
TU170340 lncRNA downstream 161737 23052420 ~ 23077876 (+) False G115371
TU170341 lncRNA downstream 161737 23052420 ~ 23077876 (+) True G115371
XM_043260577.1 mRNA upstream 3887 22868956 ~ 22879210 (+) True prune
XM_043260574.1 mRNA upstream 14369 22856300 ~ 22868728 (+) True myo1eb
XM_043260575.1 mRNA upstream 15040 22856300 ~ 22868057 (+) False myo1eb
XM_043260484.1 mRNA upstream 27258 22839422 ~ 22855839 (+) True pi4kb
XM_043260049.1 mRNA downstream 11126 22901809 ~ 22905857 (+) True gabpb2b
XM_043260051.1 mRNA downstream 16530 22907213 ~ 22908985 (+) True elp6
XM_043260052.1 mRNA downstream 16531 22907214 ~ 22908985 (+) False elp6
XM_043260053.1 mRNA downstream 18852 22909535 ~ 22915477 (+) True LOC122359863
XM_043260055.1 mRNA downstream 39738 22930421 ~ 22933982 (+) True LOC122359865
TU170081 other upstream 903729 21977117 ~ 21979368 (+) True G115193
TU170042 other upstream 988565 21883929 ~ 21894532 (+) False stt3b
XR_006252812.1 other upstream 1010125 21849989 ~ 21872972 (+) False tgfbr2b
unassigned_transcript_2160 other upstream 1744145 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 2656020 20219644 ~ 20227077 (+) False hjv
TU170321 other downstream 18878 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 73886 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 219600 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 273883 23164566 ~ 23166279 (+) False wnt4b
XR_006252835.1 other downstream 331374 23222057 ~ 23223731 (+) False rps9

Expression Profile