RNA id: XM_043260602.1


Basic Information

Item Value
RNA id XM_043260602.1
length 5931
RNA type mRNA
GC content 0.46
exon number 12
gene id rbms3
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21703724 ~ 21822473 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACAGAGGTACAGTCTGCGGTCTACCGGTAGGGGGCCTCGGCTCCTTGCTGTGTCGTCCTCAGTCTCCTCCCCCAGAGTGTGAGAGTAGGAGTAAGTCGTCCCCTTCAGCATCTAGTGAAGCCGTGCAGTGGGCGGCAGCTCTCCCATGAGGACAAACAGAGATAGGTTGCTTAAGACACTCCCCTGGCTGGGAGTGGTGCAGCCAGCCTATAACCCCACCCACCaggctgaggaggaggaggaacaCGGAGCTGCCCAAGCTGATCCCTTCAATCTTCCCCACAGTGTGGAGCAGCCggcagcgcgcacacacactcacacactctcacacagccacacacactcacactcactctcgcacacacactcgcgcgcgCAACAAAGCAGGCAGTCGAGGGAGGCGGGtaataaagaaaagaacatcacagaggaaaaaaaacagtgttgctGCACCTGGACTTTTCGGATACTGCAGTCTGCCTGGAGTTTGTGCCGTTTCCTGCGTGCCTCGTAACCTCACGGCTCACGTCTGGTCCTTCCTGCGGAGGGTTTGAGTCCCGTCAGCTGCGCTTGCAGAGATCCAAATCCGACGACTGTCTACATTGCCGCTTTGTGCATCCGCCAGACGGGAACAAAGTGTGCGACTGGGATATCTGACAAGCTCCTCTGGGAACCGACGCTACACCGActgtcagagagaaagagagagagtgagaaagaagGAGCTAGATAAATACAAAGAGAGAGAGTCAAAGTCAGGGCATGAGCAGGAGACTAGAAGCCGGTTTTCCGGAGAAGTGATCGCCACAGTGCCCCCTCCTCTTCCCTCACCTCCTTCCTtccttctctcctctctcctgtGCCGCTGCTCCTTCTTTCTTCGCACACACCTCCGCTGCTATCCCATCCTCGTACCTCAGCTCTCCTTCCATCACCTCCTCCTCCCCTGCTCTCGAAGACGGCGTTAAGAAGAGAGGCACGGCACGCGCACACTTGCCCGTGTTCCGTATcatctcattctctctcttcatccttCCTCTGGCTCCGTCCCTCACGCGGATCTAGCCTCTAGCCGCGGAACCACAAGCGGAGGCTTTTTGAGTTGTTGGATCCCACACGCGAGTCTCTGTATCCAGCCACAGCCAGAAGGATTCCAGCTACATGGGCAAACGCTTGGAACAGCAACCAATGTACCCCCAGTACACTTATTATTACCCTCACTACCTTCAGACTAAGCAGTCATATGCCCCGCCCCCTCCACCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACCTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACCGTATGGAAAAATAGTGTCAACAAAGGCAATCTTGGACAAAAACACCAACCAGTGCAAAGgatATGGCTTTGTGGATTTCGACAGTCCGGCGGCGGCACAGAAAGCTGTAGCGTCCCTGAAGGCCAGTGGAGTGCAGGCACAGATGGCAAAGCAACAGGAGCAGGACCCCACTAACTTGTACATCTCCAACCTCCCGGTTTCAATGGATGAACAAGAGCTGGAGAACATGCTGAAGCCCTTCGGACATGTCATCTCCACACGGATACTCCGGGATGCCAATGGGGTCAGCCGAGGGGTCGGCTTCGCCAGAATGGAGTCCACCGAGAAATGTGACGTGGTGATTCAACATTTCAACGGAAAGTTCCTCAAAACCCCACCAGGAGTACCAGCCCCGACGGAGCCGCTGCTGTGCAAGTTTGCAGACGGAGGACAGAAGAAGAGGCAGAGTCAGAGCAAGTATCCTCAAAACGGCCGGCCGTGGCCTCGGGAAGGAGAGAGTGGCATGGCGCTGACCTATGACCCCACTGCAATGCAGAACGGGTTCTACTCCTCGCCATACAGCATCTCTACAAACCGCATGATCGCTCAAACGTCAATCACTCCATTCATCGCTGCCTCTCCTGTCTCCACATATCAGGGTGCCGTGATAACGCCAGCCATGGACCACACCATCTCCATGCAGCCCGCTAACATGATGGGACCCCTCACCCAGCAGATGAACCACCTGTCCCTGGGTACCTCCGGCACTGGAGTGGTGACGGAGGCTTCTCCACAGAGCGTTCCGCCCTCGTCGCAGGACGCCAGCGGTCAGCAACAGCCTCTGGGCGTGGACAACGCCAGCGATCACGCGCCCACCTACACTTTTCAGCCCGCTAAATAACCAGAGGAGGAGGGGGGGCGTTGAGGTGACTGCGTTGCCTTGAGACTGGGGGACTGCAACGAGGGAACATTGAAGACAGAGCGCAAGAGATAGGAAAACACGTTTGTGTCTACTTTTGCACaagcatctaaaaaaaaaaaaaaaaaacaactacaacgAACAGACAATTTATTTAACACCTGGCCCACACCGGAGGACCTTTGGAGAACTCACAACCAGACCGGAAACGAGAGAAATGCAGTCTGGGAGATGGAGCCTACTGTTAATCGGCTACCCGAAAACTTTACCTTCATGAAGTGAACGAATTCAAACAAGTACAAGTTTTCCTATTCTTTTTTTGAATGTGCAGGTAGGTTTTCAGAAACAGTGGGTTTTTCTATTAGACGAGGAAGCACGTTCTTGTAAAACAATGAGAGAAGGAGCAAAAGAAGTCTTCCTCGGATTCTAAGCTactattacttttctttttttatgagtTAGATTTTAGTTTTCTAGAGAATATCAATGTTTTTTCATCTTTGTTGCCTTAATTTCAAGAAACATCTAAGACTTTTTCCTGTTTGAACTGAACAGACTGACGAATGCAGTGAATATGACCTGACAAAGAAAGGAAATTACCTGTATAAAGCctagaaagagggagagagagagagagagagagagagagagagagagagagagaggtctcCTGGAGACGTTTTAAATTATCAGTGGTGACTTTATGTTTAAAGGAGaggacagacaaaaaaaaaaatattgtggtcataatgatgatgatgatgatgatgatgatgattaaagAGAGTTGCATTTTTTagaaacagaggaaaaaaatgttaatccACTGCATCATGGGAAATGCAGTTTATTGTGTAGTGCAGATCATTTTTAATggcattattgtttttatctgcaatattttttatgagCTTTAAGGTGTTTTTAGCCTGCTTTGCTTGTTTCATTgcggaaaaaaagaaatctaaaacagtcaaaaaaaaaatggcagtgCAAATCTAAATAGATAAGAGCTTAAGGATTAAATCAAAAcgaaaaaaagcaaatgtgtgCAAAAAGCAATAGTAATAGGAAATTGTTGACAATTTCTTTAGTCTTTCTTAGCTGTGGATCAAATGCAGCCCATGGATGGCATATTTTATACCAAAGATGAAGAAACCCCCCTCAAGACAGTGGAGTGGATCgattcttttcatttctttttttctatttgagaTTTCTTGGCGTAATCATTTGGTTTCACAAGTATCCGTTTGACCTTGACGGCCGAACTGGTGCTTTAGGGTTTAAACTTCCTTCCACTGTTGCAGAATCTATGTCAATTGTTCAGTTGAGAGGCAGAAAACCACCATCACTGATTCTCATGAGTGTGATCTCCCCAGCAGAGGGCATCAGAGAGCGGCTGAACCATCAATCATCTCCCGTCTGCCCCGGCTGAATGAACTATACCTCTATCGCTGCACCTTCTCAGTCGCTATTAAACACGTCGCACGTCCGTTCATTTCCAGACCGTTTTCATCATTTCAGTTCAACAGGAAGGAATCAAAGCACTCACTAGTGTGTATTTTAACTCTGTGTACAGATCACTACCTCATCGAAAGCAATTTTACCATGAGGAAACACAGGAGAATGTGTTGCAGGTCATGAAACACAAGCTTTGCTTCAGGGGCGCTGAGAAACGTTCGCAATTAGCAGCATTAGCATAACACTCCCGTCCGCATTTGCAGTCGCGTCAATCGAAATGCCTCATATTTTATGCAAGGTTTCCTTAATCAACCGGATGCCATAGGAAATCTCTCGTGATAAATGGCGGTCTTTACTTGAAAAACAAAGGCTCTGTCCCAAAGCCCATGCGACACATTTTGGTGGCGTAATCCTAAAATGTCGCGACACGTTAAGGCCTCGTGGATGCAGGGCGACCATCGCGAACACTCATCAAATACACAACATTTGGGACAGAGCCTAGGGTTTCCCATCTTGGTGGGATTCGGCGGTTGCTCAGGTGCCTTGACAGCTCGGAATTAGGGTTAGAAATATCGCGCGTGACATTTCGACCTTCCATATCTGAaatctgctttcttttttatcagGCTGCCCATTCCAGAGGGGGGAAACTAGCAAATAGAAGAGTAGAAAGGGGAAACATTTAGTCcgtccaaaaataaaaattctgtcaaaatGAAGAACGATGTTAACTAAACATGTTTGGCTCCCATTGACTTGCGCTGTACGGACAAAGGatacaataaaagtcaatggGACCTGAAACTTTCCAGTTACCCTACAATcgttaaaatgtttgtaatcTGCAGAGTATTCTGCCCGACATGAGTGCATGACAGAATTGATATTTTCAGACGGACTGtcctttaatataaaaacaaggcTGCTGTCCTTAATTTACCATGAAGTAGATGTTATTTTGATGCAATCTGATAGGAAAGTGCTATATTAACACGTCAACAAAGAGTTTCAATACACATGGTGTATTATGGACTGTCTTCGCTGCCTTCATGGTCATACTGCTCATAAATACGCCTCCTAGTTTTACAATCGGGTAATTAGAGTTGTCGAGGTGCTCTGGGAATAAATTCATCAGTCTTCGAAGGGCCTTTAAACGTCATCATGAACGCTTTGGTCTTTTATCCCCCGTATTCCTACAACATGACCTCTATACAACTACATAATGATCTCAATTAGCCACTAGGGGACAGTATTAAAGCAAAGTTGGTGTACTTTATCCTCTGTGATGACCATTGCAGTGAGATATGACATTGTGCATTAAAGCGAAGCCAAGTTCGTAACGACCAAGACTGAACTGCTTCAATAAGGACAACAAGCTAGCTTTTCATTTTCACCtgtttaaacaacaacaaacaaaaaaaaattacaaaaaaagtcactGTGTTTTGTGTCTGTTATCCACTGTCTTTTTGGAGAGTTCTTTTTATCATGTGCTCGCTGCTATCAAGCATTCAGTATTTAAGTGGTCAGGGCCTCGGGAACGGAGAGGAATTCGGGCTGATGTCTCGTATGAGAGGTGAGCGTTATACACTCTGCAGCCTTCATGCTTTTCATTAAAGAGTGAATAAATGTGTCCGATTAAGCTGAAGGTTTTTCTGACTGTAGGATGGAGTTCTCATCCAAACTGTAATTTAGTAAGCTAAACGCCTTTCATCCACTCGAAGGTTTTTGCTGGCTAGAAACTCTGTGCTCCCATTCGTTGGATGTGAGGTCCAAGCCATGCATTTTTATCTGtacatctgattggctgtcacgGTTGAGGTCATTGAATGACGAATGTTCGCTCGTTCGTTGGACTGTCAGGAAACGGCGTACTACGTTCAACCAAATTCAACACAAACGGCAAAACCTCAATTAGACAATAACGTACTGGCAGATGAAATAGAGAAATatttatggaaatgtttttttgtacagGTGTTGTTGAAATATGAAAGCGGAACAGTTTTACGATGCTACGTTGATTTCTTGAGTTGCTTCACTTTCTTGCCTCCCATGTGCTCGAGCTGTGATCCTGAGAGTGTCTGTAGACCAGTGGATGTTAGGTTTAaacttctgtttattttttcttttgatgaagctttcaataaaaaaatctacaaaatcaCGCCAC

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170003 lncRNA upstream 9180 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 312562 21390781 ~ 21391162 (+) True G115074
TU169826 lncRNA upstream 534371 21167994 ~ 21169353 (+) True G115020
TU169778 lncRNA upstream 561694 21141042 ~ 21142030 (+) True G114983
XR_006252821.1 lncRNA upstream 571619 21129128 ~ 21132105 (+) False LOC122360615
TU170026 lncRNA downstream 5743 21828216 ~ 21829531 (+) True G115157
TU170090 lncRNA downstream 174537 21997010 ~ 22001617 (+) True G115200
TU170216 lncRNA downstream 704684 22527157 ~ 22530262 (+) True G115288
TU170288 lncRNA downstream 945028 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 1160588 22983061 ~ 22983700 (+) True G115401
XM_043260131.1 mRNA upstream 49665 21651508 ~ 21654059 (+) True si:dkey-29b11.3
XM_043261817.1 mRNA upstream 297900 21392842 ~ 21405824 (+) False LOC122360960
XM_043261176.1 mRNA downstream 27516 21849989 ~ 21872972 (+) True tgfbr2b
XM_043261107.1 mRNA downstream 61436 21883909 ~ 21921531 (+) True stt3b
XM_043261480.1 mRNA downstream 139747 21962220 ~ 21968547 (+) True gpd1l
XM_043260812.1 mRNA downstream 148749 21971222 ~ 21972500 (+) True tmem42a
XM_043260811.1 mRNA downstream 161417 21983890 ~ 21989916 (+) True ebag9
unassigned_transcript_2160 other upstream 564772 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 1476647 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 2055918 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 2374961 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 2450678 19197804 ~ 19253046 (+) True G114352
XR_006252812.1 other downstream 27516 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 61456 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 154644 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 1087088 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 1142096 22964569 ~ 22970526 (+) False LOC122360067

Expression Profile