RNA id: XM_043260809.1


Basic Information

Item Value
RNA id XM_043260809.1
length 1978
RNA type mRNA
GC content 0.44
exon number 7
gene id zdhhc3a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21972672 ~ 21982803 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCCTCTAGTGAAAGGGAGGTGTGGCTATCAGTTTCTCCAGAGAAGGGAGGAGCTGGCTCCGCACAAAAATGCAGCATTTCGCCAGCCCCCGTGCAATAATCGGGTAAACCACAGTTTTTGTTAAAACACTAATCTCAGATATGTTTTCCTGGTAGCGTGATCCATGCATTACTGGATCTTCTCGGCCTTGAGTGGGCGAGCAAAAGCGAGGAGCACCACCAGTGTCGCCAAATATGATGGCATCTCTGTGGTAGGATGAGAAGTCCAGTGCCGCGTTTCAGGGACGTCGAGAGGCAGGCCAGTGGCCTGCAGCCCGCACAGTGTCTTCCTCCCTGTCATGAGCAACAGACCAACATGTGGTTCATTAAAGACGCCTGTGGCATCGTTTGTGCGATCATCACCTGGCTTCTCGTCTTCTTTGCTGAGTTCGTCGTGTTGTTCGTCATGCTGATTCCATCGAAGAACCTCACCTACAGCCTGGTGAATGGCACCATCTTCAACAGCCTGGCCTTCCTCGCCTTGGCGTCTCATTTCAGAGCCATGTGCACTGACCCGGGAGCCGTGCCAAAGGGCAATGCCACAAAGGAGTACATCGAGAGCTTGCAGCTGAAGCCAGGCCAGGTGGTTTACAAATGTCCCAAGTGCTGCAGTATTAAACCAGATAGAGCTCACCACTGCAGTGTTTGTAAGCGCTGTATACGGAAGATGGATCATCATTGCCCTTGGGTAAACAATTGTGTCGGGGAAAATAACCAGAAGTACTTTGTGCTTTTCACAatgTACATATCCCTGATCTCTCTGCATTCCTTGGTCATGGTGGTCTTTCATTTTCTCTACTGCTTTGAAGATGACTGGACAAAGTGCAGTACCTTCTCCCCTCCAGCCACtgtcatcctcctcatcctcctgtgCTTTGAGggcctcctcttcctcatcttcaCCTCTGTGATGTTTGGCACCCAAATCCATTCCATCTGCACAGATGAGACGggcatTGAAAAGTTGAAGCGTGAAGACCCTACATGGGAGAAGGTAACATCCTGGGAAGCTATGAAGACAGCGTTCGGAGGCCCTCTGGCTGTGGACTGGTTTAGTCCTTTCACAGATCTCTCATGCCAGAAAGATACTTCGGATCCTGTTCCCGTGTTCCCCCAGGGTGAAATCATTGAGGAAGATGTGATTGAGATTCCTTTGGAGCCTCATTAGATCAAAAACCCTGAGACTCAAGAGACCCGAGACTCCCATTTCCTGCTTTTGGGCTTTCAAAGAAACTACTGTGGACGTTTGAATAtggacttgtttttttttaacctgtggAAAAGACATTCACATACTGTACCAAAGTGCCTTACCAAAACTACAGCTAACTCTTCTAAAGAGAAACTTATACTGTGCATAGAGACAGTGACACATAACATGTACTTCATTATGCCAGCTGTTCCTGGAACAGTGACGTCTTTTAGTTTGGTGTATCTATATGTTTGATAAGGTATAGGATATTAATAATACCGGATAAAGTAACTGTAAGTGAATGCTTTCATGTAGGGCACTTATACAATTACAGTTAAATAGTCGTGTATGTATGAAATGCCTTAATATATcaagaattcatttatttttaatggccTGGCATTGAAACACTATACAATGGCTGTAAACCAGGAATACACAAGTTCAGATGcagaatttgaaaatataacatATGGTGCTCATTTGTAGGCCTTTCGGGCCTTTTCCATAATTAGCAAAAATGCATGCAAGACTTACTATATCATACCAGCATTTCACTGatgttttacaattttattgttctttctttttattgtatttatggCCTTCTTTTCCCTTTAACTTTCCATTACTGGCTACAttattgttatgttatgttCGGATTTTTTCCATTACCTGATGTTTCCCATGGATGCACACTTTCAATTTAAGCTTCTTCAAATAAATTTGCTGTTTTTACAAGTtca

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170039 lncRNA downstream 98621 21873826 ~ 21874051 (-) True G115170
TU170024 lncRNA downstream 147235 21825198 ~ 21825437 (-) True G115155
TU169974 lncRNA downstream 358493 21605980 ~ 21614179 (-) False cenpw
TU169954 lncRNA downstream 583525 21388815 ~ 21389147 (-) True G115098
TU169865 lncRNA downstream 641314 21331012 ~ 21331358 (-) True G115051
TU170171 lncRNA upstream 247438 22230240 ~ 22237066 (-) True G115262
TU170280 lncRNA upstream 700625 22683427 ~ 22683638 (-) True G115335
TU170525 lncRNA upstream 790964 22773766 ~ 22774032 (-) True G115496
TU170565 lncRNA upstream 902913 22885715 ~ 22888001 (-) True G115536
TU170567 lncRNA upstream 909304 22892106 ~ 22901138 (-) False cdc42se1
XM_043261479.1 mRNA downstream 1965 21968837 ~ 21970707 (-) True kiaa1143
XM_043261791.1 mRNA downstream 11181 21922962 ~ 21961491 (-) False osbpl10b
XM_043261790.1 mRNA downstream 11181 21922962 ~ 21961491 (-) True osbpl10b
XM_043260130.1 mRNA downstream 315952 21654319 ~ 21656720 (-) True hint3
XM_043260042.1 mRNA downstream 321561 21640097 ~ 21651111 (-) True trmt11
XM_043261870.1 mRNA upstream 8472 21991274 ~ 22001056 (-) False sybu
XM_043261872.1 mRNA upstream 8472 21991274 ~ 22001055 (-) False sybu
XM_043261869.1 mRNA upstream 8472 21991274 ~ 22001055 (-) True sybu
XM_043261873.1 mRNA upstream 8472 21991274 ~ 22000491 (-) False sybu
XM_043261874.1 mRNA upstream 8472 21991274 ~ 21996133 (-) False sybu
TU170105 other downstream 4137 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 168868 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 267713 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 411456 21560221 ~ 21561216 (-) False G115116
TU169979 other downstream 411612 21560221 ~ 21561060 (-) True G115116
TU170138 other upstream 104847 22087649 ~ 22089054 (-) False eny2
TU170599 other upstream 949825 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 1537006 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 1605383 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 1687096 23669898 ~ 23675298 (-) False mchr2a

Expression Profile