RNA id: XR_006252812.1


Basic Information

Item Value
RNA id XR_006252812.1
length 2761
RNA type transcript
GC content 0.51
exon number 8
gene id tgfbr2b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21849989 ~ 21872972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGACTGCGCGTTGAGAGGGAGGGAGACGGAGGAAAGTCCTGCCCTTTCTGAAAGATTTCCTGTTTCACCAGGCGAGCAGAAGCCCACAGATTCCCTCACAGCGACTGTTCACTCCAGCACCATGAGACGCTCTCCTTTACTCAGGATCAGACGCTAGAATCGCCACGCTTTCTGGTCGAACCACGCCAGCCTGGTCGCGTTCACGTTAATGCGAGGGATACGGACAGGATCGCGGTTCTAATGGAGCAATATTGGCTTTCTCTGCTCTGTTGGGGGACCTTTTTGATCTCTTCGGTTGTCATGGATCGGAGCGGAGTCGATGGGATGCATCCTTTATTTAATCCAATTCGGCTTCCCCAACTGTGTAAGTTCTGTGACGTGGAGGCATCCGACTGTAAAGGAACCGGCACCTGTGAAAGCAACTGCAGCATCACAGCCATCTGTGCCAATGTCGACGAAATCTGTGTGGCTATCTGGAGGATGAGTGATGACAACAACACGATCGAGACATTGTGCCACAAACCCACCGAGCCCCTCTATGGCATCATGGTAGAGAACTACAACAACACCAagtgtgaaatgaaaaagaggATGTCCAACACGGGCCCATTCCACATCTGCTCCTGCAACGCCGAGGAGTGCAACGACATGCTGATGTTCACATTCCCTATTGGTCCAGACCCCACAAATAACCAAGTGGTGTTGGTGATTCTGGTCAGTTTACTGCCCCTCCTGGTACTAGCTGTGCTGGTCATCGCCTCCTTCTACTGGTATCGCATGTACCGTCGCCGAAAACTGGATGAGTGGGAGACCAAGAAGCCGTCCAAACGCAAGGGTCCCAAAGGCCCGCTGGACTGTAGCGACGCTTGCGCCATCATGATGGACGACGACCGCTCCGACAGCAGCTCCACACACGCCAACAACCTCAACCACAACACAGAACCTCTGCCCATCGAGCTGGACCTTCAGGTGGGCAAGGGCCGCTTCGCCGAGGTGTACAAAGCCAAGCTGAGACAAAGCCCTTCTGAGCAGTTCGAGACGGTGGCGGTGAAGATCTTCCCCTACGAAGAGTACGCGTCCTGGAAGAACGAAAAGGACATCTTCTCAGACATCGATCTGAAGCACGAGAACATCCTGCACTTCCTGACGGCCGAGGAGAGGAAAGTGGAGAAGCAGTACTGGCTGATCACGGCCTATCATCCACGCGGGAACCTGCAGGAGTACCTCACTCGACACCTCATCAGCTGGGAGGACCTGCGGCTGCTCGGGGGCTCGCTGGCCCGGGGGGTGGCTCATTTGCATAGCGACCACACCCCTTGCGGGCGGCCCAAAGTGCCCATCGTCCACCGAGATCTGAAGAGCTCTAACATCCTGGTGAAGAATGACCTCACTTGTTGCCTCTGTGACTTTGGACTTGGCCTCCGCCTTGACAACTCTCTGTCAGTGGATGACTTGGCCAACAGTGGACAGGTGGGTACAGCCAGGTACATGGCTCCAGAAGTGCTCGAATCAAGGATCAACCTTGAGAACATCGAGTCATTCAAGCAAACCGATGTCTACTCCATGGCCCTGGTACTGTGGGAGATCACGTCCAGGTGTAACGCCATCGGAGAGGTTAAGGATTACGAACCTCCATTTGGCTCGAAAGTCCGAGAGCACCCCTGTGTGGAGAGCATGAAAGATAATGTGCTGAGAGACCGAGGAAGACCAGACATCCCCAGCAGCTGGATGAAACACCAGGGTGTATCTGCAGTCTGTTCCACCATCAACGAGTGCTGGGATCACGATCCTGAGGCCCGGCTCACGGCGCAGTGTGTGGCCGAACGCTTCAGCGAGATGGACGACGACCTAGACAAGCTGTCCACCTGCAGCAGCTCCGAGGAGAAGATTCCAGAAGATTGCTCCGTGAGCGTGAGCGATgacaaatgagagagagagagagaaaggtcaATCTTActcgcactctctctctctctctctctctctctctctctctgcagaaaCTGAATGTTTGGATCCTTCGAGCGGAGGTGGAGGAATATGGCCTTTTCATAAAGCTTTATGTTTCATAACCAAAGATTTCATGCACTTTATCAGATTATGCATAGCTCACACTGAGGAAGGTCAGGCTACCGAGCAAGAGGAGCTGGACGGACGCTGGTTTTCTCCTCCTGAAAGCTGACCGAGAGCCAAATGTAATCAGGAATATGTTTTGCCTCGACACTAAAGATTCATATAGGAGATTGTAAGACTTTCTACAGATCACTTCAGGATTTTCTGGACTTATGAAAGAATGTTTTGGcgactcccaaacgattcattcagcgctccggtgattggtcgatttcatttaaagcagcgtttgtgagctGTTAACGCTCTAAAAGCGACACCTAGTGGCAaggaatgaatctgcattttcattcggGAAGACCAACAAGTGTCCCGCCGCCGACATGAAACGGCTTGAgtttcatttgaatgatttagaggcgactctttcttttgagagataGCCTAATAACTTcatacacagtgcactttcaggtttaaaacctttcaggatgttttcgttcccttagagctgtgttacacaccgcatgaaaggtctttttcaaaaatccataatagggacactttaaGTTCACAAAGTGCCTCATGTTCACATATCCTGGATATTAAATTGTGCCTCTCTTTTActacttttttatgtaatatattgtaaatctttgatgattaaaatacatttatgtacagTA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005026 transforming growth factor beta receptor activity, type II molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170026 lncRNA upstream 20458 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 155445 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 458827 21390781 ~ 21391162 (+) True G115074
TU169826 lncRNA upstream 680636 21167994 ~ 21169353 (+) True G115020
TU169778 lncRNA upstream 707959 21141042 ~ 21142030 (+) True G114983
TU170090 lncRNA downstream 124038 21997010 ~ 22001617 (+) True G115200
TU170216 lncRNA downstream 654185 22527157 ~ 22530262 (+) True G115288
TU170288 lncRNA downstream 894529 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 1110089 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 1126477 22999449 ~ 23003110 (+) True LOC122359996
XM_043260602.1 mRNA upstream 27516 21703724 ~ 21822473 (+) False rbms3
XM_043260601.1 mRNA upstream 27516 21703738 ~ 21822473 (+) False rbms3
XM_043260599.1 mRNA upstream 27516 21703738 ~ 21822473 (+) False rbms3
XM_043260598.1 mRNA upstream 27516 21703747 ~ 21822473 (+) True rbms3
XM_043260603.1 mRNA upstream 32112 21703733 ~ 21817877 (+) False rbms3
XM_043261107.1 mRNA downstream 10937 21883909 ~ 21921531 (+) True stt3b
XM_043261480.1 mRNA downstream 89248 21962220 ~ 21968547 (+) True gpd1l
XM_043260812.1 mRNA downstream 98250 21971222 ~ 21972500 (+) True tmem42a
XM_043260811.1 mRNA downstream 110918 21983890 ~ 21989916 (+) True ebag9
XM_043260213.1 mRNA downstream 131263 22004235 ~ 22010159 (+) True gdf6a
unassigned_transcript_2160 other upstream 711037 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 1622912 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 2202183 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 2521226 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 2596943 19197804 ~ 19253046 (+) True G114352
TU170042 other downstream 10957 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 104145 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 1036589 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 1091597 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 1237311 23110283 ~ 23112166 (+) False LOC122360203

Expression Profile