RNA id: XM_043261182.1


Basic Information

Item Value
RNA id XM_043261182.1
length 4885
RNA type mRNA
GC content 0.49
exon number 28
gene id cep162
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22744884 ~ 22761065 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACGTAACATGGCCAATAAGCTCTCAGTAATCCCCCGGTTATTGTAGCGGGAAACTTTTTATGATAAACAGCGTCAATCCAAAAACAATGtgaatgttaaattatttactgCATATTCATTTCCAAGTCCTGCGCGGTGAATTATGGCTCATAGACTCACTAAAGAGGAGCTGGATCAGCAGTTCGAGCAGTTCTTGAAAGAGTCTGTCTCTGATGACTCTGTTGATTTGGGCACCAGCACCAGCCGCCCCAGTGTTCTCGACGGCTTGGGACAAGCGCCCGTCAGGCCGGTGAAGAAGACTTCGGTGTCTGTGCCGTGGTGGCAGGATGATGAGGACAGTGAAGAGGGACAAGAAAAAGCCACTAAACGCcgttttactaaaattaaaacgtcACAAGCTGTGGACCCTCAGGTGGAGTCCAGACACAAAGAAAGCCCTCCTCTGGTTCCTATTAAACCCACCCCTAAACCTCGTAGCAAAGCACTTGATAGGGTGAGCCAGCTGTCCAATCAGAGGGCGTCCCACAACAGCAGTCCTGAACATAATGCAGTAAATGAGAAGATGCTATCACCTGACCATAATTATTCTTTAGAAGAGCAGAGGGTCTCAGAGGAAGACTCTTGTTGTGCACCGAGCCCTGCGCCTGATAACCCTTCCAGTTCATCAGGACACAAGAGTCCCATTCAGTCTGGTTCTGATGAGTTGTCTGTGGAAAGCAATGCTAGTGATTCAGTCGAGAGAGATGGTGGGATGTCATCAACAGGAAGGTCCTTCCTGAAATCTTTGAGGAAGACTCCGTCTATTAAGGAGGTGGATGAAGAACAGTCGAATGAGCTATTCTTGGAGAATGAAGGGAATAGAGACCGAGTCATCTTTAGCAGAGACAGTCTTGAGCCTGAAGATACCGTGATGGTTTCTGGTATGGAGCATATATCAAGTACAGGTGCTCTGGGGCTGGATACATTGGATGAGGATGAAAATACCAGGTTTTTATCCAACCTGAAGAAAGAGTCCTCTTCGTCCATTGACTATTCCACAGTGAACCAAGAACAGGATCCATCCACCCCCACCAGCCCACAAAGTGTTCCTTTTAGAAGAGAAGAAATGGATTCACAAAATGAAGAAGGACAGAGAAATAATAAAGACTCTCTTGCATCGCCTGCATATAGCGAAGATTTTGAGGAAGAGGCCAGTGAGAAAAGTGATGAGGGGCCTCAGGAGAAgAAACCTGAAAGACAAGGAATGCTGGCCAAAGTGTCACTGCATGACTCTCTCAATTCCACGGATGGAGCGTTACCTCCTTCAGTTCCCAGTTTGCCACCCAGGAAAGAAAAATGGCCAGACGtcaaacaaacagagacacCAGCATTGGAACCTGCAGTTCAGTCGTATGGTCAGAGTGGAGGGAGTGAGATGGAGGCACTGCAGGAGGCATACAGGCAGATCAGCAGCTCAGCAGGGGAGTGTGAGGACAAACCAGCCGAGGGCAGCAGgactcccctctctctctctacacttCAGCCTGCCTCCACCGTGGAGTCAGATTTACCCACTGCTGAGGAATTGATGCGTCCGATTGGACCAGACACTGGATTCACCCGTGGCTTCTCTCTGCAGCCCATAATTGAGGCTGTGCCTCGAGGCAGCGAGAATCATAGTCCTTTAAAGATGTCTTCAGACGGAAGCCCTTTCAGTTCAGCTAATGAAGGATGTGGAGGGGGTAATGCAGCTTTGGAGGGGCATCCAGGCTCCCTTCAATACACTCAGAAGAGCATCGCTGACGAGATCAAACGGCTGATGCAGGAACAGGACAGCTCCTCCATAGAACCTCCTCCTGTCAAACCCAAGAAGCGCCAGGTTCCTGCCAGAAACAATGTGTTTACATCAGCCTTCTCTAGAAAAACTCCTGTTCCATCGGCGAGAGCCAAAAAACCCGATAGCAGGCCATTACCCAGAGCACCTGCTCCCAGCAGAACCAGCCAAGCTGCTAAACCTCCATCTCCTCTAACACAGAGGAAAACTCTGAACCAGCCCCCTAAAAAGACTCAAAACCTCAGCCAAACACAAACAGTCAAAGGTTTAGACACAAGTTTAAGACTAAGCAGTGAACTGGTTGCATCCGTGCAGTCCTTTGCTACATTCCTACAGCATCAGGTTGAAGCCAGCAGTCTAGAGGATAACATCCCTCCTCGAGCAGACGGGATCACACCCGAAGCAGTGACAGGCCATCAGGTAATACAAGAGAAGATGGATGGTGGTTCAACCTTTCAGCAGGAGCGCTCATCACTAGAGCGCTTGCGTCTCCAGCTcgcaaaaagagagagagagctccaTCTGAGGGAAGAACAGTTACAGGTGCAGCACAAGCAAGAGCTTGCATCCCTCAGACAGGAGACCTATGTGTTACAGAGCAAGTTACACCGTGCAGAGGAGTCCAGTAACAAACGAAAGTGGAGTTTTGGTGAAGCTTCAGACCCTGTGACTGAAGAGAAACTCAAGCTGATAGAGAAAGAGATGAAGGAGCAGGAGACTCTGATTCAGGGTTACCATCAAGAGAATGAGAAGCTTTATCTCCAAATGAAAGCGCTCCAAgctcaaagcaaacaaaacgaGGAGGCTTTGTTCATGGAGAACCAGAGACTTCTCACTGAGCTTGCCCTCACCAGGGACAGATTGAACATGAACAGCATTCAAAGAACCGTTGGAGTGAGAAGCATTTCTGACCAAAGCTTCAACGTTGCAGAGTTGACAAGTCAGGTGCAAGCCGCACAGAAGAAGGAGGAGCGACTGCAAAATGAGATCCACAGGCTAAAACAGGAGAAGCAAGCCCTGCATGTAGACCTGGAGATGATGAGGAAAGAGCGGGACCTTGCCAGGCTTCAGGCTGACTGTACTTCAGGTGATAAAGGTTTCGAGCTTAAGATGCTCCAGGAAAAACATAGAGAGGAAGTCACAGAGCTGAAGAAGAGACTGCAGTGGTATGCCGAGAACCAGGAACTACTAGACAAAGATGCGGCCAGACTCAGAGCTGCCACCGCTGAGACACAAATGCTCACTGAGCAGGTGGAAAAGCTAAAAATGGAGGTCAGCAAGAGGGCCAATGAGCAACAACGAAAGGCAAAAGAGAGAGCGTGTGAAGCTAAAAGAATCCAGGACCTTGAACGACAGCTCAAACAGATGGAAGAGCTCTTGAAACGCAGGCATCCAAACTCCCTGCCAGCCCTAATTTTGGCCGCTGCGTCTACCGGCACAGAAGATAATGGATTAGATGTTCGTCCCCCAGCTGCCCCTCATTCCTCTCAGACTGCAGCTCTGTTGGAGAGACGTGTCCATCGACTGGAGGCGGAGCTAGAGGGCCGTGATGAAGCAGCCAAGCGCAGTCTCAGAACAATGGAGCAACAGTATCACAGAATCAAACTACAGTATGAACAGCAGATCTCAGATCTGGAGCAGCGTTTGGCTGAGAACAGCCAGAACAATCGGGTCATTTCATCAGAATTTTCTGAGTCACAAACTCAGGGGTTGAAAgcagagctggaggaagtgaaGAAGGCCTATCAACAGCAAGAGAGTTCCCTCAAGGCAGAGGTGGCCTCTCTGCAAGAACAACTCTGCCAGGCCCAGACGCAAACAGACAAGCCTGCCCGCAGCCCCTCTCGCCACCAGCTCCATGCGGAGGCGGCACAAGCAACACGCATTGAGAGACTGACCCAGGAACTGAGCTCCAAGATAAGCACCATTAAGGAGCTGAGCCGTACTGTAGAGCGCCTGCAGAGGGAGAGGAGAACCATGCTGTCGGGTCCTGGCTTCGATCGTGCTTCCAATGAGCCCAAGCGACATTTGGGTGCAGCCAAAGAGCCCAAAAAACCTGCAGCTGAGACTTTCCCCCCTACCCAAGACGAGAAAGACTACCATCCCGGCGCATTCTCAGGCTCACACATCTCAGAGGTGCAACTGGAGAATGACAGTTTGAGGACGAGATTGGAACAGCTAGAGATAcagagagaacaagagaaagCTTCCTTACAGGCTGCAGTCGCACATGCACAGAGTCAGCTCTTCAGgattcaagAGCAGAATGCTGAGCAGTTTGCTTCAGTCAAGGCTGATCACCAAAAAGAAACTGAACGCCTCATGGCTTGCCATGCCCTTGAGCATTCCTCCTCCAAAGTCGCTGAACTCACCAATCAAGTGAACACACAGTCGATCATAGTGCAGCATTTACAGGGGCAAGTGAAGGAGCTCCAGGGAGTCAAAGATGCTCTGGCTGTGTCTAAGATCAGAGAGGAAACCCTACAGAATCAGCTCTCTAAACTCCTGGAAGAGCTGAAACTGGCCAAAGAATCTCATAGTCCTGAACTTAGACACTTCACTAGCCTGGAGCAGAAGATTCAGTCCATGGAGCTCCGTTATAATCAGCGCGAGAAACAGCTTCAGCAGGTGATTGCAGACACACGGCGGGTGGTGGAGCAGGAGCAGCAGGGTGAGGTGGAGCGCTGGAAGAGACTCGCTCAAGGCAAGGCTAAAGAGCTGGAGGTCTTCAGACTGGAGCTAGACTCCATACTGGACGTGCTCCGTGAACTCCAGAGACAGGGTGTTGTCATTCCCGCCCCCGAACACACTTCCGCCAGCACCCACGCATACCTCCCCCTCCAATCCTGAGATGTCTTTGCACCACTCAGAACATTCAAATTTCTAGCAGACTTCCTGACAGAACTAATCACTGATTTAAATGTGTGGGagtatttataattacatattgtaaaagctttatttattgttgagGAACATGCAGGATGTGTAACATCAAATACAAACAATTTAGTAATTTGTAGCATAAATCCAAATGTTACTTTGTATtaaagttaattattatttaca

Function

GO: NA

KEGG:

id description
K16809 CEP162; centrosomal protein CEP162

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170216 lncRNA upstream 214622 22527157 ~ 22530262 (+) True G115288
TU170090 lncRNA upstream 743267 21997010 ~ 22001617 (+) True G115200
TU170026 lncRNA upstream 915353 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 1050340 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 1353722 21390781 ~ 21391162 (+) True G115074
TU170288 lncRNA downstream 6436 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 221996 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 238384 22999449 ~ 23003110 (+) True LOC122359996
TU170358 lncRNA downstream 247539 23008604 ~ 23009835 (+) True G115384
TU170340 lncRNA downstream 291355 23052420 ~ 23077876 (+) False G115371
XM_043260329.1 mRNA upstream 7088 22735879 ~ 22737796 (+) True si:ch211-198c19.1
XM_043261409.1 mRNA upstream 104909 22553764 ~ 22639975 (+) False adgrb1a
XM_043260853.1 mRNA downstream 55998 22817063 ~ 22830341 (+) False pogzb
XM_043260855.1 mRNA downstream 56012 22817077 ~ 22830341 (+) True pogzb
XM_043260852.1 mRNA downstream 56012 22817077 ~ 22830341 (+) False pogzb
XM_043260856.1 mRNA downstream 56012 22817077 ~ 22830341 (+) False pogzb
XM_043260854.1 mRNA downstream 56012 22817077 ~ 22830341 (+) False pogzb
TU170081 other upstream 765516 21977117 ~ 21979368 (+) True G115193
TU170042 other upstream 850352 21883929 ~ 21894532 (+) False stt3b
XR_006252812.1 other upstream 871912 21849989 ~ 21872972 (+) False tgfbr2b
unassigned_transcript_2160 other upstream 1605932 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 2517807 20219644 ~ 20227077 (+) False hjv
TU170321 other downstream 148496 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 203504 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 349218 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 403501 23164566 ~ 23166279 (+) False wnt4b
XR_006252835.1 other downstream 460992 23222057 ~ 23223731 (+) False rps9

Expression Profile