RNA id: XM_043261216.1


Basic Information

Item Value
RNA id XM_043261216.1
length 7128
RNA type mRNA
GC content 0.50
exon number 33
gene id rims2a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19499281 ~ 19643486 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCCCACACTTCCAATTGGGATTCTGTGTCGCTGCAtccatttttgtgtatttaagatATCTTCAAGGATTACCAAACCTGGAGAAAAGCGAGGCACCGGCGCAGAGGGACTCGAAAGGGAAACAAACGTTTATTATGAGATGCAAAAGAACTTTTCCAGGACGATGACAGCGATGGGTTAGACAGGATTGAACAGGATGATGGCCAAATAAAAGCATCGGCGTGTAAAGATGTCTGCTCCAGCCGGGCCCCGCAGCGGGCCTGTCCTGCCGGAGATGCCGGACCTGAGCCACCTCACCGAAGAGGAGAGGAAGATCATCCTCGGTGTCATGGACAGGcagaagaaagaggaagagaaggagcAGTCCATGTTGAAgctcAAGGAAGATGCAAAGTCTCAGCCAGTCCAGTGGTTTCCCTTTAGCGGAATCACTGATCTGGTTAATAATGTTCTCCAGCCCCAGACAAAGTCCCAAAACCAACCGCAAACAGAGCCTCCAAAGGAGCCAGAGACGAAATTGCACCAGCAATTTGAAATGTATAAGGAGCAGGTGAAGAAGATGGGGGACGAGGCGCCGAGCACCCAGGAGCAGAAGAGCGACGCCCCCACCTGCGGAATCTGCCATAAAACCAAGTTTGCCGACGGCTGTGGCCACCTCTGTTCTTATTGCCAAACCAAGTTCTGCGCTCGCTGTGGAGGAAGAGTTTCACTGCGCTCCAACAAGGAGGATAAAGTGGTGATGTGGGTATGCAACCTGTGCCGAAAACAACAAGAAATCCTCACCAAGTCAGGGGCCTGGTTCTACAGTGGCTCAGGGGGCACCCTGCCCTCGGGTGCGAGTGACCCTCGCCGCCGCCACGAAGAGGCTCCGCAGGAAAAGAAGGCCAAACTTCAGGAAGCCCCACTGCTGTACCAGGGGCCTCCAGGGGACCGCAGCCGAGCTCCAGGACTCCCGCGCCAGGCGTCCCTCAACAACGACTCCAGTCTGAAACCCAACGACCCTCTGAGCAACAGGAAAAGAAGCCCATCAGCAACCAGAGATCCAAACCAAAAATACGACCAAAGGGAGGAGAAGGCGGAGCGTTCGCAGTATGCCCCAGGGGAGGGCGGCATGCCACGATCGCCGTCTGACTACGGGGCCGGAGACCGGCAGTGGCGGGGAGGCTATGGCCGCTCCTACGAGGATGCAGAGGTAGCGCGGAGTGCCTACCGCACTCGACGGGGCGGCTGGCACTCTCAGGAAGAGTATCCACCCGAACCCGGCTTCCTGCCCGATGGCCCGCCCCTCAGCGAGCACGAGCTCCAGCGGCAGCGGCAGGAGGAGTACCAGAACCGCTACCGCAGCGACCCGAACCTGGCCCGTTACCCTGTCAAACCCCAACCGTACGAGGAGCAGATGCGCATGCACGCGGAGGTTTCGCGATTCAGGCACGAACGACGGCACAGCGACGTCTCCCTGGCGTACACGGAGATGGAGGAGCCTTTGGGGCCCCTTCGGGTTCCCCCTTACTCACCGGGTCCCGGACACACCCACTGGAGGTCCAACCACAGTCCACCCGGAGTGGACTCCCTCCACAGGCAGCAGCACCTGGATCCCGTCTCAGCCGTAAGGAAGAGTAAGCGGGAAAAGATGGAGAGCATGTTGCGGAACGACTCGCTCAGTTCAGACCAATCAGAGTCTGTCAGGCCACCGCCGCCCAAACCTCACAAGACCAAGAGGGGCGGCAAAATGAGGCAGGTGTCCCTGAGCAGCTCAGAAGAGGAGCTGGCCACTACACCGGAGTACACCAGCTGTGAGGACGTGGAGATCGAGAGTGAGTCTGTGAGCGAGAAAGGAGATTTGGATGGCCACTGGTGGGATCATACAACGTGGCATAGCAGCGATGCTTCCTCCATGTCTTTGCACCCGGTCACGTGGCAGCCCTCCAAAGATGGAGATCGACTCATCGGCAGGATCTTGCTCAACAAGCGCATGAAGGACGGCAGCGTTCCGCGCGACTCTGGAGCCCTTCTGGGACTGAAAGTGGTTGGAGGAAAGATGACAGAGTCCGGGCGACTTTGTGCGTTCATCACCAAAGTAAGGAAAGGGAGTTTAGCGGATACAGTTGGGCATCTCCGACCAGGTGACCAAGTCCTAGAATGGAACGGCCGACAGTTACAAGGAGCCACATTTAAAGAAGTTTACAATATCATTTTAGAATCAAAGCCAGAGCCTCAGGTGGAACTAGTGGTCTCACGACCCATTGGCGATATCCCCAGGATACCAGAAAGCACACATGCACAACTGGAGTCCAGTTCGAGTTCATTCGAGTCTCAGAAGATGGAGCGCCCCTCCATATCCGTCACGTCTCCCATGAGCCCCGGAGTGCTGCGGGATGCCCCTCAGTACTTATCGGGACAGCTTACAAGCCAAAGCCTTAGTAGAAGAATTGAGCCTTTTAACCCTAGAGTTCAGGTCAAACTTTGGTATGACAAAGTCGGCCATCAGCTTATCGTCACCATACTGGGTGCAAAGGACCTGCCTTCAAGGGAAGACGGCCGACCACGCAATCCTTACGTGAAGATCTACTTCCTCCCTGACAGAAGtttgaatCATTGTTTCTCCAGTGACAAAAgcaaaagaagaacaaaaacagtaaagaaaTCTCTAGAGCCCAAATGGAACCAGACCTTTATGTATTCCCCCGTCCACCGGCGGGAGTTCAGGGAACGCATGCTGGAGATCACGCTGTGGGACCAGGCCCGGGTGCGAGAGGAGGAGAGTGAGTTCCTGGGAGAGATCCTCATAGAGCTGGAAACAGCGCTGCTGGACGATGAGCCGCACTGGTATAAGCTACAAACACATGATGTCTCATCGGTACCCCTGCCCAAGAGCTCCCCCTGCCTTCAGAGACGAACGCTGCATGGAGACAGTCCCACACGCAGACTGCAGaGGTCTCAGAGGATCAGCGACAGCGAGTTCTCAGACTACGACTGCGAGGATGGTGTTGGCGTCGTGTCAGACTATAGAAACGGCAGGGACCTTCAGAGCTCCACCCTCTCTGTGCCTGAGCAGGTCTTATCGTCCAATCACTGCTCTCGGTCAGCTGACATCAACCGAGCACGCTCACGGTCTCCCAGCATGCCCCCTTCTCAGAGTCATTTTCTCACCTTACCTCGAACCCGACACAGTCAACCTCATGACAGTCAGCTGGAGGAACTCAGGAATTACGGAGCGCCAGACAGGCACGAGTATCACCACAGGTCCCGTTCTGCAGACCAGCGGTCCGCCCTGGAGCGGCCCATGTACAGTCGCTCTCGCTCCACGGAGCGGCCCCCAGACGGCCCCCACATGAGATCATCGATGCCCTCCCTGCCGTCAGGACATTCCGCTCCACCCTCCCCTGCCTTATCGAGGGCGCATCCTCGCGGAGGATCGGTTCAGACCAGCCCCACCGGGACCCCCGTGAACAGCAGGAGAGGACGACAGCTCCCACAACTGCCTCCAAAAGGAACGCTGGAAAGAAAAGATGGAGATGAAGAACTTGAGCCCTGTCCAGAAGACACGGACTCCCCCAGTCGAACGAACTCAGGTGCTATGGATGTGGAGGAACGAACGCGGCAGATGAAGCTGAAGATGAACAAGTATAAACAGGGAACCGGCTCAGATTCAAGGCTGGAACAGGACTATCACAAGCGTTCGGGCAGGGATCCTCAGCGGGGAGAAAACCTCTCGGCCAAGTCTTCGGACAGTGATGTGAGCGACGTGTCCGCTGTGTCGAGAACCAGCAGTGCGTCTCGATTCAGCAGCATGAGCTACATCTCTGTCCAGTCAGAACGGCCGCGGGGCAGCCGCAAGATCAGTGAATTTACgtccaaaatgaaaaacaggcaAATGGGAACGGCGGCCGGGGGCAACATGACCAAGAGCACCAGCATCGGCGGGGACATGTGCAGTCTGGAGAAGACCGACGGCAGCCAGTCGGACACGGCCGTGAGCCTGGTGGGAACCGTTGACAAGAAGCGGCGCTCCAGCATCGGCGCCAAGATGGCGGCGGTCGTGGGCTTGAGCCGAAAGAGCCGCAGCGCCTCGCAGCTCAGCCAGACAGAAGCAGGAGGAAAGAAGCTGCGCAGCACTATCCAGAGGAGCACAGAGACGGGACTGGCTGTAGAGATGAGAAGCAGAATGACCAGACAGGCCAGTCGTGAATCCACCGACGGCAGCATGAACAGCTACAGCTCAGAGGGAAACCTCATCTTCCCTGGAGTGAGACTCTCTTCTGACAGTCAGTTCAGTGATTTTCTGGATGGACTTGGCCCGGCCCAGCTTGTGGGAAGACAGACATTAGCCACGCCCCCTATGGGTGACATTCAGATCGGCATGGTGGAAAAGAAAGGAGCCCTTGAGGTAGAGGTCATCCGAGCCAGAGGCCTTGTGGGAAAACCAGGTTCTAAGGCACTGCCAGCCCCTTATGTAAAGGTGTATCTACTGGAGAACGGCGCCTGCATagccaaaaagaaaacaaaagtagcACGAAAAACGCTGGACCCTCTTTACCAGCAGCAGCTGTCGTTTGAAGAGACCCCAGGAGGAAAGGTCTTACAGATCATTGTGTGGGGAGACTACGGACGTATGGACCACAAATCCTTCATGGGAGCCGCTCAGATACTTTTAGATGATCTGGACTTGTCCAACATGGTCATTGGCTGGTTCAAGCTGTTTCCTCCCTCTTCACTGGTCGACCCAACCCTGGCCCCGTTGACCAGAAGAGCTTCCCAGTCGTCTCTCGACAGCGGGTCCGGGCCGTTCGGTCGCTCGTAGCAGTTTCCTGAAATCTAGCGTTATTGTAGCAGCCATTGGGTGGACTTTGAGATTTGCGACAGGTCCCGTCCCCCCGGTAACACTGCATGCTTGATGTTGTGTGTTCAGAGCTTGTTTCTTAGGGGTGAAAAAAAGCGGTCCTGTTTTTGCTCGGGGAAAAAAATGCCGCACACATTGTGCGCAAAGAGCAACCCCTAGAGGGCAGGGACAAGACGAAGCTGGAAAATGGCCTCCTTAGCCCGAGGAACGTCACAATTCCTGCTTTTAGAACCTATTTGAAGCCATTGGAGATGAGGCTGAACTGAGAACTGACGTGTCGAGTTCTTCAGAAGCCCTTTTTGAAACGGGGTGAAACGTTCTCTTCGACTTTCGTTTTCCatttatgtttcttttaatgttgATGTATTTGTATCTACATGGGCTAACAGTGTTCCTTGGGTCAAGCCATGCCAACAGACCCAGAAATGTACACACAAAACAAGAATATGACGTGGGAATGAGCACCTCACTCCCCAGATACGATTCTGCTAGATCAATACAGAGATGAAATGTAGGTTTGAATCATCTTTTAAGATCAAATTGAAGTTCTTCTCTTGATACCGTATGAAACctaaagaagaaataaagagttttttttgttgcatggaCACAACTTTAGctgaacttaaaaaaagaagtgaataGGAAATAAATTTCTCAGACTGctacttgcaaaaaaaaaaaaaaaaaaaaagatgacaagaaaaaaaaaaaagataaggaaaaaaaatgacccGGATCAGCCATTTTCAacaatttctattatttttaaagataaatttcACTAGTGCATGATTTTCATGGGGAGTGAATGCTAcagtgtgatttaaaaaaaacaaaacaaaaaaaaaaacatgaaacctTGTTTTTTGTCCTGTAGACCGTTCACTGGTCTctctactgtatttttacagaaaagcaGATAAACGACAagcttaacattttatttacagtgagaAATCTGTTCATGTGACAAAgacgtaaaaaaaataataaataaatgtctatgatttattattgtaaagGCGTGAGCCTTATGAAGCTAAAGACGATGTGCAAATTGTACGTTTCTCTACTTCTCCCTCGTCCCAGGGTAAAACTCTCTGTACTTCTTGCTTCCGTTGTCAGATTTTTTCCCCTCCCCGATATCGTTCAAGTTCTCTtttcaatttttcttttcaggGCTGTTCGTTTCCCGCAgctcttttagttttagtctgTATATTGTTTGAAGTTCATTCGTTTAACAAGCATGTTGAAAAGGGTTTTTGGCAACATGGCTTGGGCACATCTTACAGTAACTCAGCATGTTTTGATAAAGAAgatatttggagaaaaaaaaaatgcagtttcttgTACAGTGCATGTCGACGACGATCCTCTCCCTCCTCCCCCCCTTCACCCTGAATTGAATTTTAGCGAAAATTAGGCAGTGGTCTCCCACGGACCAGAAGGGCAAAATTCCGAATGAACATTCCACCTTGTAAAATCATACTTTGTTGACAAATTTAAGGGAAAAACGTGACCAGGGATTTTTATATCTTTACGGAAATATGAGCTGCAGTATTCCTGACAAAAGAGCCCAAAATTTCACGAGATCTTTTTACCGGAGACGGCTGCAGCTCGCTGACTTTCGCAGTATTGTGCTGTACAGTTTTCCGAGCATGATGCTGTCTGCAGAGAAATGCACATCGGGACGATGATATTGCCACACAATATAACTTTTTcggtttttatttcttcatttccaGAAAGTAGaagtcatttaatatatttttgttagtttatttacaAGCCAAgacctatttattttttattttctattttttagcAATTATCAGAGCTTCTTATATCCGAGAAGTTTATGAATCATAGTTTTAATGCCTGAATGGAAATACACACTGAGACATTATACCACTTCCTtcgaaaacacattttttctgattaatcattttatcaAGCTTTCTCATTCTGTTATTGACTTCTGTGTACGTATGTCACAATCTACAGAATTTTAATAGCAAACTCTCTAGATATTGTCAAAGCTTATGGAAGTAGGATAATGTCTCATGATGTCAAGGGTATGTTCTGTTCTATTTCAAATGCCttctctattgtttttttttcttttttttttttttttttctttttttggtgcaATGTGTTCATGCCAAGGCTATGTCTTGGTCTAGTATGGTTGAGTACAGAGATTTATGTaagttatttttcaaattaaaaaataaaaaaatggatattACACTGGAAAATGAGCATTCGCAAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168842 lncRNA upstream 190067 19308264 ~ 19309214 (+) True G114379
TU168830 lncRNA upstream 206400 19283778 ~ 19292881 (+) False fxyd3
TU168828 lncRNA upstream 215766 19280413 ~ 19283515 (+) True fxyd11
TU168807 lncRNA upstream 250961 19245933 ~ 19248320 (+) True G114345
TU168816 lncRNA upstream 293317 19202394 ~ 19205964 (+) True G114354
TU169042 lncRNA downstream 4418 19647904 ~ 19648864 (+) True G114520
TU169094 lncRNA downstream 35897 19679383 ~ 19679686 (+) True G114556
TU169096 lncRNA downstream 38654 19682140 ~ 19682452 (+) True G114558
XR_006252841.1 lncRNA downstream 59239 19702725 ~ 19719929 (+) True LOC122360931
XR_006252843.1 lncRNA downstream 366067 20009553 ~ 20010093 (+) True LOC122360959
XM_043261245.1 mRNA upstream 1554 19491155 ~ 19497727 (+) True dcaf13
XM_043261246.1 mRNA upstream 11489 19483949 ~ 19487792 (+) True LOC122360535
XM_043261241.1 mRNA upstream 15391 19480366 ~ 19483890 (+) True zmp:0000000951
XM_043262017.1 mRNA upstream 24183 19428549 ~ 19475098 (+) False arhgap33
XM_043261244.1 mRNA downstream 343 19643829 ~ 19647301 (+) True LOC122360533
XM_043262009.1 mRNA downstream 82670 19726156 ~ 19865094 (+) True zfpm2a
XM_043262010.1 mRNA downstream 82670 19726156 ~ 19865094 (+) False zfpm2a
XM_043262011.1 mRNA downstream 82670 19726156 ~ 19865094 (+) False zfpm2a
XM_043261807.1 mRNA downstream 254300 19897786 ~ 20012359 (+) True oxr1a
TU168846 other upstream 170518 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 246235 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 659053 18827254 ~ 18840228 (+) False LOC122360132
TU168577 other upstream 678145 18809154 ~ 18821136 (+) True LOC122360692
TU168569 other upstream 738379 18758384 ~ 18760902 (+) False LOC122359904
TU169046 other downstream 2472 19645958 ~ 19647806 (+) False LOC122360533
XR_006252832.1 other downstream 576158 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 1495395 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 2206503 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 2240443 21883929 ~ 21894532 (+) False stt3b