RNA id: XM_043261302.1


Basic Information

Item Value
RNA id XM_043261302.1
length 1468
RNA type mRNA
GC content 0.47
exon number 11
gene id emc2
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22179651 ~ 22208604 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTAACTTACGACGTCACTGTCATCCACCAATCAGCTCACAAGGGGCGGAACTAGGAAAACATGTCGTCTATATCGGAGCTCTACGATGTTAGTTGGGAAGAAATGCGTGACAAACTGCGTAAGTGGAGAGAAGAGAATTACAGGAACAGTGAGCAGATTGTGGATGTCGGTGAAGAGCTGATTAATGAGCATGCATCTAAACTGGGAGATGACATTTGGATAATTTACGAGCAGGTGATGATTGCAGCGCTGGACTGCAGTCGTGACGATCTGGCCTGGAGTTGCCTGCAGGAGCTGAAGAGGCAGTTTCCAGACAGTCACAGAGTGAAGCGATTAGCAGGGATGCGGCTGGAGGCTCTGGAGAGGTATGAGGATGCCAATAAGCTGTATGACTCAATACTACAAGATGACCCTACTAATACGGCAGCAAGGAAGCGCAAGATCTCCATCCTGCGAGCACAGGGCAAAAGCAGTGAGGCCATCCGTGAGCTCAACGAATATCTGGAGCAGTTTGTGGGAGATCAGGAAGCATGGCATGAGCTGTCAGAACTCTACATCAATGAGCATGATTATGCAAAAGCAGCTTTTTGTCTTGAAGAGCTGATGATGACGAATCCACATAATCACCTGTACTGCGAACAGTATGCTGAGGTAAAGTACACCCAGGGAGGTCTGGAAAACCTCGAACTGGCCAGGAAGTATTTTGCGCAGGCACTGAAGCTTAACAACAGAAACATGAGGGCCTTGTTCGGCCTTTACATGTCGGCCAGTCACATCGCTGCCAGCCCAAAAGTGAGCGCAAAGGTGAAAAAGGACAACATGAAGTACGCAGCGTGGGCCACTTCTCAGATTAGCAGAGCCTATCAGATGGCGGGCCGTGGGAAGAAGGAGAACAAATGCTCGGTGAAGGCGGTGGAGGAAATGTTGGAGTCCATGCAGATCACCATGTCTTAAACCTCAGCTCTGCCCCCCCTCCTTCCCACAACCTCTGTCACCACAACACCATGGCAGCTCTCCCTGCTCACTATAgtacaccaccaccaccaccctcAGACCAGACCACCCAACCCAACCTCCTCTATATCAGTTCCTCCATCTTTGTATTGTTTTGAGGTCTCCGGGTAGGCTTCAGAAACCCTGAACCATTCCACAAGTTTCTTGATTCAACCTTCAGCActcctttatttattattaagagCTTATCGTTGGGTCAATTGGTGGAATCAAATGCGTCTGCGATGGAAGTGAGCGTGAAAAGGAAAATCTACTAATGTTTTTAGTTTGGTCAGTTCTTATAGTTTATAAGGGTTCGATTAGAGAGAAAACTGAGAAGATGGAAATGTACTTAGTGTATGTGCAAGAAACTGATGTCATGACTGATCTGTTTCttagcaaaataaatgaaccaGCTGGAAGATCAGTTTCTTTCTTAGCAAAATAAAGGACTGCATTTTTGACTAACCATA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23563 EMC2, TTC35; ER membrane protein complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170039 lncRNA downstream 305600 21873826 ~ 21874051 (-) True G115170
TU170024 lncRNA downstream 354214 21825198 ~ 21825437 (-) True G115155
TU169974 lncRNA downstream 565472 21605980 ~ 21614179 (-) False cenpw
TU169954 lncRNA downstream 790504 21388815 ~ 21389147 (-) True G115098
TU169865 lncRNA downstream 848293 21331012 ~ 21331358 (-) True G115051
TU170171 lncRNA upstream 21636 22230240 ~ 22237066 (-) True G115262
TU170280 lncRNA upstream 474823 22683427 ~ 22683638 (-) True G115335
TU170525 lncRNA upstream 565162 22773766 ~ 22774032 (-) True G115496
TU170565 lncRNA upstream 677111 22885715 ~ 22888001 (-) True G115536
TU170567 lncRNA upstream 683502 22892106 ~ 22901138 (-) False cdc42se1
XM_043260245.1 mRNA downstream 50142 22124696 ~ 22129509 (-) True trhra
XM_043261389.1 mRNA downstream 90559 22087641 ~ 22089092 (-) True eny2
XM_043261872.1 mRNA downstream 178596 21991274 ~ 22001055 (-) False sybu
XM_043261610.1 mRNA upstream 121575 22330179 ~ 22332034 (-) True cd83
XM_043261611.1 mRNA upstream 126559 22335163 ~ 22344100 (-) True zgc:113232
XM_043261609.1 mRNA upstream 139046 22347650 ~ 22351043 (-) True snrnp48
XM_043262106.1 mRNA upstream 211266 22419870 ~ 22523750 (-) True tsnare1
XM_043262107.1 mRNA upstream 212195 22420799 ~ 22523750 (-) False tsnare1
TU170138 other downstream 90597 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 211116 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 375847 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 474692 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 618435 21560221 ~ 21561216 (-) False G115116
TU170599 other upstream 724023 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 1311204 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 1379581 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 1461294 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 2118103 24326707 ~ 24327973 (-) False phactr4b

Expression Profile