RNA id: XM_043261440.1


Basic Information

Item Value
RNA id XM_043261440.1
length 2015
RNA type mRNA
GC content 0.40
exon number 5
gene id cmtm6
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20778080 ~ 20784441 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcaaaaaaaaatcccaataaCACACTTCTGTCGTAAACTTCAGCGAGCTCCGTAGGAAGTCCTCCCTCATTGAAGAAAGCTGATGGGAGTGCGGAAGTGAAACACAAAGGACGCGTGAACGGCATAAACAGAGCGCATTATAACAACCGCCCGAGATTTAGCTACAATACAGCATGGCCACCGCGGACACGGTGTACAACACCACGACGACGGCGCAGGAGCCCAAATCCAGAAAATGGATCATCGTGCCTTCAGAGAACCTTGACAAAGTTAGACTCTTCATAAAAGTGCTTGAAGTGCTCCTTTCGTTTGTGGCTTTTGTGATGGAGGAGATCGTGTCCAACTGTTCACAATGCGGACCACTctatttttttgaatttgtCAGTTGCACAGCCTTCCTCTTCACATTGCtgctcctcatcctcctggccaCGCCGTTGCACCAGAGAGTTGGAATTAACAGCTGGCCTGCTCTGgattttttttatacgGCAATCATGGCAATCCTGTTCCTCCTTGCCAGCATCGTGTTTGCAGCAGACAATGGTCAGACAGATCTGGAGCGGGGCGCAGTGGCATTTGGCTTTATGGCTACGGTGGTCTTCTTTATTGACTCTGCTTTGATCATAAAAAAGCGTGGTTTTCCTTGCCGAAAGGGAAACAATGAACAAGCAGAGCGCGCGCCCAGACCAGAGAGTGAGAAACTTAATGCTAATGGAACTGACTCGGTAAACTGAAGCATTTTGCCCGCATATTCAAAAGCTTTTCCCAGTCGTCCAACAATTTTTATacatgagaaatgtttttacccaaagtgcaaaaaaaaacaaaacaaaaatttttaacatttccacTTCAGTCAGTTACTAACTGGCGAGCTGAACCAGTTTTATACTGTGCctggatttatttttgtaatatttttttaataagtactAATTTTACAAGTAGAAAGCATTCCTTCGTAGGGATTCGTCTGTGTGGGGATCGTTTTATTTTGCCATTACTATTTTCACACGGATATCCTTTTGTAAAGCAAACTAAACATATTTTGACCGTATACTTTTGTATGACTAcgcaaaaaaaagtcattccaTCTTTATTAAAGTGTATGTGCTGCACATTTTCTGTACAAAAACATGCGCCGTATTTCTTAAAAACGTGCTAATCccttttgtttttatggttaTATATGCATTCCTGAAATAATATATGATTGATCGTGTTGACAGTAATTATTTATCTCCTGTTTTGGATATATTGGATAAGaagtcatgattttttttaaacacttgcaCTGTATacacaaatgtcattaaatTACTGTAGAGATGTTGAGTGAGCTGTCGAAATGAGTGAGGTGACAGCGCGATGAAGATGTTATGGCCCTGTGATTATCATGTTTTGCTGTGCAAGGGACGTCAGGGGTGTACAGTCGgagatattttttctttctcctatTGAAATGCCTTTTTTGTATTGAGTGGAACCGGAAATGTTGtatatttcttttgtgctttatcTTGTTCCATGTGAGCCcagattgtgtttttgtgagcgCGTTGAATCTAATGAAAGTTTAGTAACCTGACATATATTTGCCTTTATCTGGAGGAACGTGCGTTTAGGCccaaatgtgtttgtttaaatgccCGCGGAGATGAATGGACTGCAAGTTTCTTGAGACACTAATCTGCCTTACGCTTCCACCTTCCTGTGCTGTACAACTGACTGctgctttctgtgtgaataGCATTGTGTTTATAAATCCTGATATTGTGTTGACGCTTTAGGATAAGCCACTTTCTCGTTAATCTTAAAATGTGGATCAATCATCTGGGAGGATTAATTATTGCTAAGgattttgatgatttttaagATTAAAGGTCTAGCGGGTCTGTTTGAATACCAGCAGAGTTTCTACAAAAGGTTGCATGGaacattttgcagaaatgctTTTGTAAACATCTCTCCATTCCAgttaagcaataaataaatggctcCTGGGCTCTGAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169573 lncRNA upstream 10160 20767278 ~ 20767920 (+) False siglec15l
TU169531 lncRNA upstream 139440 20637446 ~ 20638640 (+) True G114826
TU169514 lncRNA upstream 191253 20586060 ~ 20586827 (+) True G114813
XR_006252845.1 lncRNA upstream 355891 20414210 ~ 20422189 (+) True LOC122360972
XR_006252804.1 lncRNA downstream 144261 20928702 ~ 20929441 (+) True LOC122360417
TU169773 lncRNA downstream 333708 21118149 ~ 21120532 (+) True G114978
XR_006252821.1 lncRNA downstream 344687 21129128 ~ 21132105 (+) False LOC122360615
TU169784 lncRNA downstream 344836 21129277 ~ 21132102 (+) True LOC122360615
TU169778 lncRNA downstream 356601 21141042 ~ 21142030 (+) True G114983
XM_043260061.1 mRNA upstream 3702 20770464 ~ 20774378 (+) True cmtm7
XM_043260060.1 mRNA upstream 7688 20767348 ~ 20770392 (+) True siglec15l
XM_043261990.1 mRNA upstream 13733 20759368 ~ 20764347 (+) True LOC122361050
XM_043261991.1 mRNA upstream 18848 20756995 ~ 20759232 (+) False rpp25l
XM_043261058.1 mRNA downstream 322646 21107087 ~ 21117690 (+) True ptpn23a
XM_043261059.1 mRNA downstream 325434 21109875 ~ 21117690 (+) False ptpn23a
XM_043260165.1 mRNA downstream 363316 21147757 ~ 21157049 (+) True kcnv1
XM_043262099.1 mRNA downstream 426411 21210852 ~ 21314454 (+) True si:dkey-22o22.2
XM_043260619.1 mRNA downstream 562216 21346657 ~ 21354616 (+) True ndufaf6
XR_006252832.1 other upstream 551003 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 1130274 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 1449317 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 1525034 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 1937852 18827254 ~ 18840228 (+) False LOC122360132
unassigned_transcript_2160 other downstream 354440 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 1065548 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 1099488 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 1192676 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 2125120 22909561 ~ 22911076 (+) False LOC122359863

Expression Profile