RNA id: XM_043261480.1


Basic Information

Item Value
RNA id XM_043261480.1
length 2586
RNA type mRNA
GC content 0.42
exon number 8
gene id gpd1l
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21962220 ~ 21968547 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAAAAGTCGACCGACACGTTACCTCCCACCGACTAACTGCTTGactttatagtattattatctGTATTGTTTACTTGAAACTCTTATTCACTTGTGGAAAGCGAAAGTGGTTATGGCTGCTCCGCTGAAAGTATGTATTGTTGGTTCAGGAAACTGGGGCTCTGCAATTGCAAGAATTATTGGCACCAATGCACAGAAACTCCAGCGCTTTGCCACCACAGTCAAGATGTGGGTTTATGAAGAAATGGTCAACGAGAAAAAGCTCTCTGAGATTATCAACACCGAACACGAGAATGTCAAATACCTTCCAGGCTATAAACTCCCAGAGAACGTGGTTGCGGTGCCGCAGCTTCGGGAAGCTGCAGAAGGTGCTGACCTACTGGTGTTCGTTGTCCCTCATCAGTTTATCCGGAAACTGTGCGATGAGATGGTGGGCTGTGTTTCGGATAAGGCTCGTGGAATTACATTAATCAAAGGCATTGATGAAGGACCAGAAGGATTGAAGCTCATCTCCGATATAATTCGGGAAAAAATGGGCATCGATGTCAGTGTCCTGATGGGCGCCAACATTGCCAACGAAGTGGCAGCTGAGAAGTTCTGTGAGAGCACCATTGGCAGCAAGGTGTTGGAGAACGGCATCTTGTTCAAAGAGCTCCTGCAGACCCCTAACTTCAGAATCACTGTGGTGGATGATGCTGACACAGTAGAGCTCTGTGGAGCCCTCAAGGCACTTTGATTTAGAACATTGTTGCTGTGGGTTGCTGTGGGCGCAGGCTTCTGCGATGGTCTGCGGTGTGGAGACAACACCAAAGCAGCTGTCATTCGACTGGGATTGATGGAGATGATCGCCTTCGCCAAACTCTTCAGCAAAGACGATTCCGTATCCTCTGCCACATTCCTCGAGAGCTGCGGCGTGGCTGACCTCATCACTACCTGCTACGGTGGAAGAAACCGGCGCGTGGCTGAAGCTTTTGCCAGGACAGGGAAGagcATCGAGGAACTGGAGAAGGAGATGTTAAATGGACAAAAGCTTCAGGGACCATTGACTTCTGCTGAGGTTTATCATATTCTCAAACAGAAGGGCCTAGTGGATAAGTTCCCACTGTTCACGGCTGTTTATCAGATCTGTTTCGAGGACAAACCAGTTCAGGACATGATCACCTGCCTGCAGAGCCATCCGGAACACCTGTGAGAGTTCCTCTGTGTCCCCTTCTTCATCACCATCCTCTTCGTTCTGTTAGATGGTCCTACCtccaacatttctcattttcttcatTAATAAGTTCTCTTTTTGTCCCAGGTCCAACTCTACACTAATGGTTAGGCTTGAACTCAGGGGTTTGTTTCCAACCCAGCAGGTTTTGTGGCTAATGTGCTCgaaatgatttttcagaaaaGCCATGTGTTTGAGCCTACATGGCATTTTtaactctttttctctctgtctgactGCCCTCTTGTGGATGGCCCACAATATCACCTCACTGACAGAGATGAAATGCCTCTTTTTAAATGACGGTGGAGACCTCATCATAGAGGCTCACTACACGTCCATATTGAGAGCAACATGACACGACTGCAATGCCTCCGTTACAATCTTTACGATCCTGTAGAACCAGCATAATACCAGTTTTTATAGTTACGCTTCATTTAAACTAGGTTTAACACGCTTTATTTCCGTTGTAATTGCTTAGTTTAATgctgataaatatttaaactgccATTTACACTGAACTTTTTGATAGATTAAGTAAAACTTAGATTTCTGTGAAGATGCCTTTTAACTCCTCACTGGTCAGGAACAGCTGTCGCAGGTCAACGAATACTTGAATggaagttttgttttgttttaaaggacAGTATATTCTATAAAAGGGGCTTAAATCGGTCACCTCAGTTTCCCAGCAGCCCCCTTTTAAGACCAAGTGCTTTCAAGACAGGGAACATAAAACGTGTTATAGAATGACATAGTTGTCTTTACTTTTTATCatgttacagtaaaaactaCAGTGTTGCATATCTAAATTTCAAGAATGCATTGAAAACACAAATTATTGAATCCCTAAATAGTAACTACTTTAGCATCCTGATCAACTACCATATCTACAGTTCCAGTTGTAATAACTTTATGAAGATTAGCATTCAAATACTAAtgtaatctttatttatacCATGAAAAAAAGTAGTATTAAGATCTGTGATTTTCAAATGAAGGAGCGTTTTACAGGAGCAGCTAGTGTTTGGATCTATAATGGccttctgtttttgtttttttttcaaggctAGCTCTTAGCATGTATCTGTTACAGTgtcatttctgttgtttttattattttcagtgtttatgtAAGAGTTTAATTCATACTACAAGTATTCAGCTGTGGAAATGTTGAAGTGTACCAAGTCTAACACTCCAGTAGATAAACTATATACGTTTTCATGTTGCTATATGAATCCGtcctgggttttttttcctgagaatGTGATCATTTTTGCAAGTTGCGTGTCTAACAAATGTCAACAAGGCTGAACGTTGAAACAAATGCTGCTTTTGAAAGTAACCAATAAAATAATCTGtgctaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170026 lncRNA upstream 132689 21828216 ~ 21829531 (+) True G115157
TU170003 lncRNA upstream 267676 21693494 ~ 21694544 (+) True G115134
TU169926 lncRNA upstream 571058 21390781 ~ 21391162 (+) True G115074
TU169826 lncRNA upstream 792867 21167994 ~ 21169353 (+) True G115020
TU169778 lncRNA upstream 820190 21141042 ~ 21142030 (+) True G114983
TU170090 lncRNA downstream 28463 21997010 ~ 22001617 (+) True G115200
TU170216 lncRNA downstream 558610 22527157 ~ 22530262 (+) True G115288
TU170288 lncRNA downstream 798954 22767501 ~ 22768460 (+) True G115342
TU170376 lncRNA downstream 1014514 22983061 ~ 22983700 (+) True G115401
XR_006252753.1 lncRNA downstream 1030902 22999449 ~ 23003110 (+) True LOC122359996
XM_043261107.1 mRNA upstream 40689 21883909 ~ 21921531 (+) True stt3b
XM_043261176.1 mRNA upstream 89248 21849989 ~ 21872972 (+) True tgfbr2b
XM_043260601.1 mRNA upstream 139747 21703738 ~ 21822473 (+) False rbms3
XM_043260599.1 mRNA upstream 139747 21703738 ~ 21822473 (+) False rbms3
XM_043260598.1 mRNA upstream 139747 21703747 ~ 21822473 (+) True rbms3
XM_043260812.1 mRNA downstream 2675 21971222 ~ 21972500 (+) True tmem42a
XM_043260811.1 mRNA downstream 15343 21983890 ~ 21989916 (+) True ebag9
XM_043260213.1 mRNA downstream 35688 22004235 ~ 22010159 (+) True gdf6a
XM_043260421.1 mRNA downstream 168021 22136568 ~ 22139827 (+) True LOC122360094
XM_043261628.1 mRNA downstream 252327 22220874 ~ 22258766 (+) True eif3ea
TU170042 other upstream 67688 21883929 ~ 21894532 (+) False stt3b
XR_006252812.1 other upstream 89248 21849989 ~ 21872972 (+) False tgfbr2b
unassigned_transcript_2160 other upstream 823268 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 1735143 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 2314414 19645958 ~ 19647806 (+) False LOC122360533
TU170081 other downstream 8570 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 941014 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 996022 22964569 ~ 22970526 (+) False LOC122360067
TU170363 other downstream 1141736 23110283 ~ 23112166 (+) False LOC122360203
XR_006252766.1 other downstream 1196019 23164566 ~ 23166279 (+) False wnt4b

Expression Profile