RNA id: XM_043261590.1


Basic Information

Item Value
RNA id XM_043261590.1
length 979
RNA type mRNA
GC content 0.45
exon number 8
gene id psma2a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20041536 ~ 20044792 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGAACTTATCTTTAGTCTACAATACCCACAATTCATTAGGTAACtctttcagccaatcagatcaaTTAAGCGCGTGACGTCACTTCCCCATCAGTCAGACACAGCCATGGCAGAAAGAGGGTACAGTTTCTCCCTCACCACTTTCAGCCCTTCAGGGAAGTTGGTCCAGATTGAGTATGCTCTGGCAGCTGTAGCAGCTGGTGCTCCTTCAGTTGGAATAAAAGCTTCAAATGGGGTTGTTCTTGCTACGGAAAAGAAGCAGAAATCAATATTGTATGATGAGCAAAGTGTTCACAAAGTAGAACCCATAACCAAACACATTGGTATGGTCTACAGTGGCATGGGTCCAGACTACAGGGTTCTGGTGAGAAGGGCACGGAAACTGGCTCAGCAGTACTTTCTGGTCTATCAGGAGCCTATTCCTACAGGCCAGCTTGTTCAGAGAGTGGCTTCTGTTATGCAGGAGTATACGCAATCGGGGGGTGTTCGGCCGTTCGGTGTGTCACTCCTGATTGCTGGCTGGGATGAAGACCGTCCATACCTTTTCCAGTCAGACCCCTCGGGAGCGTACTTTGCATGGAAAGCTACCGCGATGGGGAAGAACTATGTGAATGGAAAAACATTCCTTGAAAAAAGATACAATGAGGATCTGGAACTGGAAGATGCAATTCACACTGCTATTCTGACTCTTAAGGAAAGCTTTGAAGGTCAAATGACCGAGGACAACATTGAGGTGGGAATCTGCAATGAAGCAGGATTTAGGCGACTGACTCCAGCGGAGGTGAAAGACTATCTAGCCGCCATTGCTTAAAAGTTGTAGATTGAGCACTGATTGTCGTTTTCACTAGTACAACTTCATAAGTACTTATTCATGAGTCCGAGACATGTAAAGGCGTAGAAATGAGTGAAAGTTGTATTGTTTATACTTTGCTTTTCTTTCCTactgaaggaaaaaataaacaagtctTTTGAAGTTA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02726 PSMA2; 20S proteasome subunit alpha 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169169 lncRNA upstream 948 20038574 ~ 20040588 (+) True G114589
TU169156 lncRNA upstream 11904 20026841 ~ 20029632 (+) True G114585
TU169150 lncRNA upstream 23365 20016710 ~ 20018171 (+) True G114582
XR_006252843.1 lncRNA upstream 31443 20009553 ~ 20010093 (+) True LOC122360959
XR_006252841.1 lncRNA upstream 321607 19702725 ~ 19719929 (+) True LOC122360931
TU169179 lncRNA downstream 35081 20079873 ~ 20082046 (+) True G114593
XR_006252749.1 lncRNA downstream 190206 20234998 ~ 20242544 (+) False LOC122359979
XR_006252748.1 lncRNA downstream 190206 20234998 ~ 20237858 (+) True LOC122359979
TU169331 lncRNA downstream 222774 20267566 ~ 20278774 (+) False slc4a7
TU169352 lncRNA downstream 368765 20413557 ~ 20413889 (+) True G114707
XM_043261879.1 mRNA upstream 5398 20034132 ~ 20036138 (+) True zmp:0000000930
XM_043261807.1 mRNA upstream 29177 19897786 ~ 20012359 (+) True oxr1a
XM_043260731.1 mRNA downstream 496 20045288 ~ 20055412 (+) True LOC122360280
XM_043260733.1 mRNA downstream 496 20045288 ~ 20055412 (+) False LOC122360280
XM_043260732.1 mRNA downstream 496 20045288 ~ 20055412 (+) False LOC122360280
XM_043260734.1 mRNA downstream 10848 20055640 ~ 20060794 (+) True LOC122360281
XM_043261482.1 mRNA downstream 17984 20062776 ~ 20074718 (+) True washc5
TU169046 other upstream 393730 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 712773 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 788490 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 1201308 18827254 ~ 18840228 (+) False LOC122360132
TU168577 other upstream 1220400 18809154 ~ 18821136 (+) True LOC122360692
XR_006252832.1 other downstream 174852 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 1094089 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 1805197 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 1839137 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 1932325 21977117 ~ 21979368 (+) True G115193