RNA id: XM_043261807.1


Basic Information

Item Value
RNA id XM_043261807.1
length 4267
RNA type mRNA
GC content 0.49
exon number 17
gene id oxr1a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19897786 ~ 20012359 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCGCATTACTGTGACCGGCTGCATAAACTCATCAGAGACGTCTGCGCACGAGAGACCTGGGACATGGAGAGAGCTTCGTTCTGAGAGTAAGAGTTTTTCCCAGAAGGAAACCTTTGAGTCAGAGGCGAACGTCCTGCCAACATGTTCAGCACCAAAAGACTGAAGAAGAAGTCCCAGTCGGTGGATATCGGCTCTCAAGGTTTTCCGGCACGGCTCATCCCGAGTCTGTCCTTAAACAGATCTTCACCACCTGTTGCCAAGACAACCACATCTGAGGTGCAAGAAAACAACACCACCAATTCCCAGCGCCGTGGTCCGCGGTGCAGCGATCTCAAACGAGGATACACAATAGATACCGGCCAGAAGAAGACGCCGGAGAAGAAGGATGGAAGGCGGATGTCGTTCCAGAGACCGAAGGGCACCATTGAGTATTCCGTGGAGTCGCGGGACACTCTGAACAGCATTTCACTGAAGTTTGACACAACTCCCAACGAACTCGTTCAGCTCAACAAACTCTTCTCCAGAAATGTGGTTCCCGGtcagGTCCTGTATGTCCCTGATCCGGAGTACGTGTCCAGTGCGGGTAGCTCTCCCTCCTTCAGTCCCAGCAGCCCGCTCTCTCCCACCTCCTCAGAAGCTGACCTGGAGAAAGCGACCACGGACTCCAATGGTCCACCTCGCTCCGATGCTCCCGCCCCTCCTGTCTTCTCTGCCCTGCGGCCCTCCCGTGTGGTTTCCTCCACCTCGGAGGAAGAAGAGGCGCTGACAGAGAAGTTCCTCAAAATCAACTGCAAGTACATCACAGACGGCAAGGGTGTTGTTAGCGGAGTATTGCTGGTGACCCCCAACAACATCATGTTTGACCCTCACCGGACGGACCCTCTTGTTCTGGAGAGAGGCTGTGAGGAGTATGGCATCATGTGTCCACTGGATGAGGTTCAGTCTGCAGCCGTTTACAGGGAGATCACCGACAGCAAGATCCGTGACTCCATACCACcGGATCTTGAAGCTGTCTTCTCTGGAAGCTCTCATCAAACAGATCAGCGTTACGACAGCGCCAGCACTGCCCCCCGCAGCACCGAGGGCTCCATCTCAGAGGACGTTTTCACCGAGTCAGAGCTCTCGCCCATCCGGGAGGAGCGGCAGTCTACGGAGGAGCTACAGCTTGAGGACAAGTCATCAGGAGCCTCGTCCCAGTCTGTGCAGACCCTTCTCCAGGAACCTCAGATGGCTGAGGGCAGCCatacagacagagaggagaaaaaGTCAGAGGAGGGAGAACCAGCCAGCGAAACTGCCCAGTCCAAACATCCCAGCCAGGAACAGCCAAGCACACCCACCAGCAGGGACCACCAGCAACCATCCCACTGCCAGACTGAAGAAGTCACCCCCTCCTCAAGTTCTCAGAGCTCGGCCCCTGGAGCAGGGGAGGCCCTGGGGCAGGAAAGCAGCCCAGATGTGGCTAAACTGACCCGAGATGGTACCCGAGATTCAGAGACGGATGTAGAAGAGCTGAGAAAGATGTGGAAGAGTCACACTATGCAACAAGCCAAGGAACAGCGAGAGAGTGTCCAGCAGGCCCAGAGAGAGAACGTCCAACAGTCTATAAGCAGCCAGAGATTGAGCTCTGCTGAAGGCCTCATTGTGTCCAAGGAGAGGCAGAAGTCTCACAAGTTTCTATGTCTACGGGTTGGCAAGGCCATGAAGAAGACGTTTGTGTCCAACGCTAGCGCCTCCATGCAGCAGTATGCACAGCGTGACCGCAAGCATGAGTACTGGTTTGCTGTTCCCCAGGAGAGgtCAGACCACCTGTACGTTTTCTTCATCCAGTGGAGCCCAGATGTTTTTGGGGATGGAGTAGGAAGCATCAGCCGTGATCCTGGCTTCATCGTGGTGAAGAAAATCGAGGAGTCTGAGGCAAACGAGGAGCAGCAAACAGTAGACATTTCAGCTAAAGAGTGGGAGGTAGTGTCATGGACTGAGTACCACCGCCGGATCGATGCGTTAAACAGTGAAGATCTGCGCTCCCTATGCAAACGCCTCCAGATCACCACGAAGGAGGACGTGAACTCCAAACATGGCTCGTCCATCACCGCCAGCCTGGAGCCGGAGACTTTCAAGCCCAACCTGAACGAACCCAGTGACCTTCTAGAGGCTGAGCAGATAGAGAAGCTGGCGAAACATCTTCCACCCAGAACTATCGGTTACCCCTGGAATCTGGCCTTCAGCACGTCTAAACACGGCATGAGCATTAAGACGCTGTACCGGGCCATGCAGGACCAGGACTCACCCATGCTGATGGTCATCAAAGACAGCGACGGACAGGTATTCGGGGCTTTGGCGTCAGAACCCTTCAAAGTCAGTGAGGGTTTCTACGGCACAGGAGAGACTTTCCTGTTCAGTTTCTATCCAGAGTTTGAGGCGTACAAATGGACTGGAGATAATCTGTTCTTCATTAAGGGAGACATGGACTCTTTAGCCTTTGGTGGAGGGAGTGGCGAGTTCGGGCTTTGGCTGGACGGGGATCTTTATCACGGCAGGAGTCATTCGTGCAAAACCTTCGGGAATCCCATGCTCTCCATGAAGGAAGATTTCTTCGTGCAGGATATTGAGATCTGGTCGTTTGAGTAGCAGCTCACACGGAGGTACCTTTTTTTGTCGTTAGTTGGAGAGGGGAATTGGACACGAGGCAGATCCCAAACCTTACTGCACATCACCGCGGCTCCCAGGAAGCCCGTAACGGACGCTACTGTTACCGCGCTTGTCGTATGTTACTCCTGCATTTAATACAGAGCTCTTCTTTGTGCtgtttagtatgtgtgtgttttgttcaaGCCGTGTGCAGCGTCAATAACCAACAGGACCCCCTGAGCACTTTTAACATCGAgtggagatgatgatgatgatgatgatggtgatgatggtggCGGCCGCATAGGGTTTGGGCTGCCCGAAAACTGCCATAGTCCAATTTACCTGAGCCAAAGCGCCAGGAGTTTGTTCAAGAGATGATGTTAGCCGATAGGATGTCACTACTGGATCGATggggattttaaaaaaaaacaaaaaaaactacggaaaaagaaaaacaaacaactgaaaacacATTCCCTTGCTCTCAGAGGAAGAATATGCAGTTTTGGGACGTCGACGGATGGCGGTGGCGTCCGGGAgaagacgacgacgacgacgacgacgcaTCCGTAGTTTCTTTCGAGGCGAAATATTCAAGTGTCGTGAAATTCGTAGTCTTTCTGTCGTTCACTATCATAGCACACACCATGTCGAAGCACATAATCGGAAACCCCATAGTCGTAATGTTCTGTTCAGTGGGTTTTACGTGTGAGTGTGGCTAACATCGGCCCCTTCTCTTCGGAAAGGGTCGACTTTTACTGTTCGTAGGCAGAAATGTGTCGCAATAGATTTGTGGAATATGCAAATTCCTGTCCTGTGACCTCAAATAATCCAGACGGGGCACTTTTGTTTTCCCCGTTTCTCTTTCCGAGAGACCTTTTACGTCTTGACCGATTAATTGCTTTTCTGGGTATCATTTGAAAAGCCTGAGACGtggtttaattgtttttcatgAATATGACAAtactatatttatgtatatgattatatatataaattcacatatatatataacttacaaatatatatatataatgatatatatattgctgTTAAGTGTGACAGTGATCTTTTTTTGTGCTGATATCTCAGCTGTTactaatatattgtatattaccctgtaaattaatgttaaaatagtaGATTTGttcctatatatataaatatataaatgaatatacagtGTGTGGATTGGTGAGTTGCTTCTCGCACTTTATTAATCTAGTTTCAAGCCAGGTTCTTCAGGCCTCATTAGCAGTAgcagtacagtatatatttttgtttatttgtcttttaGATCATAGGGTAAACGAATCGTTTATAAAGAGCTTGCTGCTACTGTGGAGAGGAAAAGTCTCAGCGGTCGAGCACAGGGTCGAACGTGACGGACTCCAGCAGGGAAAGTCTCTTCTTCTCACGTGTCCTGTCCcagcgtttttttttctgtctggtCTTTTGGGTTTTTTCGGTGTCTAGATTGACTGTGCACACAGCGAGAGGAAGCCAAACGTCCTTTCAGAGTCGCAGACGAGAAGTGCAACAAATCCTTCATCTACTTCACCGGAATATAATGTTACAGTGATGTATAAAGAACAATGAATACTAATAAATTGTTGTAACCTGGGACAGAA

Function

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252841.1 lncRNA upstream 177857 19702725 ~ 19719929 (+) True LOC122360931
TU169096 lncRNA upstream 215334 19682140 ~ 19682452 (+) True G114558
TU169094 lncRNA upstream 218100 19679383 ~ 19679686 (+) True G114556
TU169042 lncRNA upstream 248922 19647904 ~ 19648864 (+) True G114520
TU168842 lncRNA upstream 588572 19308264 ~ 19309214 (+) True G114379
TU169150 lncRNA downstream 4351 20016710 ~ 20018171 (+) True G114582
TU169139 lncRNA downstream 9370 20021729 ~ 20078782 (+) True G114578
TU169156 lncRNA downstream 14482 20026841 ~ 20029632 (+) True G114585
TU169169 lncRNA downstream 26215 20038574 ~ 20040588 (+) True G114589
TU169179 lncRNA downstream 67514 20079873 ~ 20082046 (+) True G114593
XM_043262009.1 mRNA upstream 32692 19726156 ~ 19865094 (+) True zfpm2a
XM_043262010.1 mRNA upstream 32692 19726156 ~ 19865094 (+) False zfpm2a
XM_043262011.1 mRNA upstream 32692 19726156 ~ 19865094 (+) False zfpm2a
XM_043261244.1 mRNA upstream 250485 19643829 ~ 19647301 (+) True LOC122360533
XM_043261239.1 mRNA upstream 254300 19541132 ~ 19643486 (+) False rims2a
XM_043261879.1 mRNA downstream 21773 20034132 ~ 20036138 (+) True zmp:0000000930
XM_043261590.1 mRNA downstream 29177 20041536 ~ 20044792 (+) True psma2a
XM_043260731.1 mRNA downstream 32929 20045288 ~ 20055412 (+) True LOC122360280
XM_043260733.1 mRNA downstream 32929 20045288 ~ 20055412 (+) False LOC122360280
XM_043260732.1 mRNA downstream 32929 20045288 ~ 20055412 (+) False LOC122360280
TU169046 other upstream 249980 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 569023 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 644740 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 1057558 18827254 ~ 18840228 (+) False LOC122360132
TU168577 other upstream 1076650 18809154 ~ 18821136 (+) True LOC122360692
XR_006252832.1 other downstream 207285 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 1126522 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 1837630 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 1871570 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 1964758 21977117 ~ 21979368 (+) True G115193

Expression Profile