RNA id: XM_043261816.1


Basic Information

Item Value
RNA id XM_043261816.1
length 2910
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC122360960
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21392842 ~ 21405824 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAATCTGCTTTGATGTCTTAAACTTGTAATTTTGGGCTGGAAGATAATAACGGACAATTTACCTACAGACAGCTGTAGTCATTGTCCCTTCAATTCATGTGCTGCACGCCAGGCCGGTGATGAATTGGGCTTCGTGATGAATTCTTAATTGATTCTGCCTGGCTCGAGCGTTTCGTGTAACTACTTAAAGAAACTCAATAAAAGCCTGTAATGAACTGGAGAGAAACGAAAGCGGTAGAATCGAAACAATTAAGAACCCGCCGGCCACTAAAACGTGTTTCAGAACAGTCAAAAATGAAGTGAAATATGAAGTGAAAACTTACACAGCGCAAACATGTGCACTTGACCTGTGACGGTCGCACGATAGGGTGCGCGTTTGTGAGGCATGATGCTCAAATTCGCCCCGTGGTGGAAACCACATGCAACAACTGCGCGAAACACCAAAGACTGAAGGTGCAGGGTCACGTTTTTCTCCGACAGAAAGCTTTGGCTGTTAGGCTGACTGACTGAGAGATGcttcttctgctgctgtgtgttgttcTCCAGGCTCTGTCCTTGTCTCAAGGGCTCAATGGTACAGACGATCGATCTTCCAAGAGTGTGAAAAAGCATGCTGATCGTTCAGACAAACCCATTGAGCTCTCTACACTAAGACTGTCCGAAGGCTGCTTTGGTGTGCCTAGGGCTCTTTACAAGAACACTACAGTCGATGTGACCTTCAACCTTTTGGATGCTCAGAAAAAGGACGAGCTTGCTCTCCAGATCTGTGCACGTTTGGGTTGTGGCCGTGTTTTCAAGCACAGCACGACTGCAGCAGTGCACGATGGCAGATGCCTTGCAGACTGCATCCTGACAAACTCAAAACTGCACAACTGCACTACAGCTGCAAAAGGCGACTGCACGAATGCAACCGAAGTCATTTGCGAGCAAGGAGCTGTCCGATTGGTCGGAGGACGCGATCGCTGTGCTGGTCGGTTGGAGCTGATGCATTCTGGGAATTGGGGAACAGTGTGTGATGATGACTTTGACATCAATAGTGGACATGTAGTTTGTACCCAGCTGGGATGTGGAAGTGCCATAGGATTGAACTTTTTTGGGCCTGGAACAGGTGCCATTTATATCAGTCAAATGCAATGCAGTGGCTCCGAAAGCAGCTTATGGAAGTGCGGCTCAGTCAACATCACTGCCAGCAACTATTGTGGACATAAAGAAGATGTTGGCGTTTTGTGCTCAGAAAGTGTTGAGATCGTAACCACAAGCGCCACAACGGAGCTGAACTTGACAACTCTGCTGGCAGTGTCAACTGCAGTCACATTTACAGAAAGCAGCAGTGGTGTTTCGCCAGCAGCGATTGGCTGCATCATCTTATCTATTGCTCTGCTTATGGTTATTGTTTTAAACGCTGCTGCCTATGTGCATTTCAAAAGAGCAAAGGCAGAATGTGTGATTCACCAACAACACAGTTATTCTCATTCAAGCCTGGAGAACCAGTCCAATGCACAGATAGGAatctacaacacacacactgtccacACTGTGGAGGGGTGTCAGTACGAAAGTCTTGGCCCGAGAATGAGCTCAAACTATGGCCGCAGATGTAGCAAGAGAACAAATCGACCCAATCACAACCGTGACAGCTCCACTGATTCAGACTATGAACTTCACAACAGAGATCGACCGCAAAGGCTGCATCTAAACTCAAGAGATGTGAATGACGTAGATAGTACATGCTCTAGAGAAGAACGCGTGCACAATGTGGAAATCAACATGGACGCCATCCAAAATTCAGGTGATAAACCTCCACTGAAGCCACTGTCTTTCGGGGCTCCTGACACCCACAAGCAACCATTGTATAAGAATGATACCAGCAGTACTTCTTCTGGAGAGTTCTATcaaaacacaaagacagacaCGGACAACATTCTCCAGTCACCTCCGACGCCCTTGTCTTATGGTGACCGTGACGTACCTGGAACTGACAATAAAGGAGCAGATGCGAGTGATTCAAGCAGCACATCTTCTGGCGAGTTCTATCAGAACACAGAAACTCACACAGACAACAATTTCATGCCAcGCGAGGAGAGACCATCCCTACAAGAAAGGTCAGCTTTCGCATCCCTGTCTTTCGGTGACCATCGCTTGCCAAACCCTGACGGTAAAGcGGTGGATGTGAATGATTCAGACAGTACGTTTTCTGGCGAGGACTATCAAAACACAGAGATCCAGTGTGAAGATGAGGAAAGCCCATCGCTTCCTGAGAAGTCACTACAGACACCTCAGATGACAGGAAACACTGCTGGTTACAGCGGCTGTCATGTAGCCGTCGCCCACAGTCAAGATGGGAATGATTCAGATAGTACTTCATCAGAAGAGTGTTATCAAAACACAGAGATCGAAGAAAACGGCTTTCATCACGATGTTGAGGAAAGCCCATCACTTCCTGACACGTCTTTTCAGAATCCCCACATTGCACAGATGACAGAAAGTACTGACGGTTACGGGGACCATCATGTACCTAGAAACCTCCGTCAAGaagcGGACAACAGCAGCACAGCATCGGAGGCATCATACGTTAACGTCCCACCCAAAGAAGAGAGCGCTGACCATTCTGCTGCATCTTCAGAGAACGACTATGATGAAGCTGAAAACTGGTAAAATCAACCaacaaaattaagaaaaagtAAAACCCCCCACAAATGATTCTTTTGATTCGTGATTCTATTTATTCTGTGGACGATGATGAGCATTTATCAGTCGATGAGCAAACAACACGTCCCTGAAAACCAAGGAACGTGACGCAGACGGGCCTTAGCAATACCTGAGTGCTTTCTTAAGGAATATTCTGgaagaacagaagaaaaaatatcttcattgtttattttataataaacattaaactatAACCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169926 lncRNA upstream 1685 21390781 ~ 21391162 (+) True G115074
TU169826 lncRNA upstream 223494 21167994 ~ 21169353 (+) True G115020
TU169778 lncRNA upstream 250817 21141042 ~ 21142030 (+) True G114983
XR_006252821.1 lncRNA upstream 260742 21129128 ~ 21132105 (+) False LOC122360615
TU170003 lncRNA downstream 287670 21693494 ~ 21694544 (+) True G115134
TU170026 lncRNA downstream 422392 21828216 ~ 21829531 (+) True G115157
TU170090 lncRNA downstream 591186 21997010 ~ 22001617 (+) True G115200
TU170216 lncRNA downstream 1121333 22527157 ~ 22530262 (+) True G115288
TU170288 lncRNA downstream 1361677 22767501 ~ 22768460 (+) True G115342
XM_043261013.1 mRNA upstream 14005 21365339 ~ 21378842 (+) True plekhf2
XM_043260619.1 mRNA upstream 38231 21346657 ~ 21354616 (+) True ndufaf6
XM_043262099.1 mRNA upstream 78393 21210852 ~ 21314454 (+) True si:dkey-22o22.2
XM_043260165.1 mRNA upstream 235798 21147757 ~ 21157049 (+) True kcnv1
XM_043261059.1 mRNA upstream 275157 21109875 ~ 21117690 (+) False ptpn23a
XM_043260131.1 mRNA downstream 245684 21651508 ~ 21654059 (+) True si:dkey-29b11.3
XM_043260602.1 mRNA downstream 297900 21703724 ~ 21822473 (+) False rbms3
XM_043260603.1 mRNA downstream 297909 21703733 ~ 21817877 (+) False rbms3
XM_043260601.1 mRNA downstream 297914 21703738 ~ 21822473 (+) False rbms3
XM_043260599.1 mRNA downstream 297914 21703738 ~ 21822473 (+) False rbms3
unassigned_transcript_2160 other upstream 253895 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252832.1 other upstream 1165770 20219644 ~ 20227077 (+) False hjv
TU169046 other upstream 1745041 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 2064084 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 2139801 19197804 ~ 19253046 (+) True G114352
XR_006252812.1 other downstream 444165 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 478105 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 571293 21977117 ~ 21979368 (+) True G115193
TU170321 other downstream 1503737 22909561 ~ 22911076 (+) False LOC122359863
TU170371 other downstream 1558745 22964569 ~ 22970526 (+) False LOC122360067

Expression Profile