RNA id: XM_043262010.1


Basic Information

Item Value
RNA id XM_043262010.1
length 4670
RNA type mRNA
GC content 0.48
exon number 8
gene id zfpm2a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19726156 ~ 19865094 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCAGctcctcgcacacacacacacacacacacacacacacatacacacacacactcgtgcgAACGCACTGAGCGAGGGGGACGCGTGTGTGAGAGCAAGAGCCTGTGAATAATCCTCATTCCTTCTGCGACCCGTTCGGCTCTTGGATGATCCATAATAACCTCTCATAATaacctataataataattaataatcaataacCATCCGGATCAACATGTCCCGCAGAAAGCAGAGCAACCCCCGGCAAATCAAGCGTCCACTAGATGGAGGtctggaggaggaagaggaggagtgCATATCAGATGCAAATGAACTCACTGCTAAAGAGGAGTTTTCAGTGGAGGAAAACTTTCCTGCTGACTTTGAGCCAGACAACCTCACCTGTGAGGACATGGAGTACTTCTGCGGCAAAGgGGAGGAGAATGGCAACAGAGAAACaggagagacagagatggaAACAGACAGTGAGAAGACCAGACACCCCCCTATAGAGCCGGAGGAATGGGACGGTCCACGAGAGCTGGACCTGTTCAACAAAGATGGAGAACGACGGATTCACAGCCGCCAGCAGCTTCCTGTAGGAACCACATGGGGGCCTTTCGAGGGAAAAATTGAGCTAAACACAGATGCTCAGACGAAGCCGCATGTCCCGCTGGTGCTGAACGCAGGCCCCAGGTGGCTGCTGGATGTGACTTGGCAGGGAACAGACGACAACAAGAACAACTGTGTGGTTTACAGCAAAGGAGGCCAGTTGTGGTGCACCACGACCAAGAACATGATGGAAGGTGAAGAGCTGGTGGCATTCGCAGTGGACTTTGACTCTCGATTGCAGGCGGTCAATCACATGTCTCTCGGTGAGGGCATGTACCCAGCACGCCTTCTGGACACCATCCAGCTCCTGCCCCAGCAAGCTGCCATGGCCTCCATATTACCTACAGCTATAGTCAACAAGGATATCTTCCCCTGTAAAGCGTGTGGGATATGGTACAGGAGTGAGAGGAACCTTCAGGCCCACCTGATGTATTACTGCAGTGGGAGGCAGAGAGAACCTGATAACGTCTCTGAAGAAACTGACACCAATTCCCACCAAACTCCCAATATCTGCCCTTTTCCACAATGCAACAAAAGCTTCAGCAACCCGCGTGCTCTGGAGATGCATTTGAGCACACACAGTGGTGTCAAAATGGAAGAATCTCTTCCCCCTGGCACCAGTTTGAAATGCACAATCTGTAACTTCACAGCAGATTCACTCCTTACATTCCAGCACCACATCCTTTCACACCTGTCACAGGCAGCCTTCAGATGCAATCACTGCCACATCAGCTTCCAGAACCACAGGGAACTGCTGCAGCATCAAGACTTACACGGACACTCCGGGAAGATTCACAGGGAGAGCGACAGCGAGAACTCCccgagaggaggagaggaaagcCTACAGGCGGCACGAGCAGAACTGTCAGGCAGGAAGGATGTGGTTATGCAAAGTCCCAAGAGTACACCTAACAAGGCCAATAGTCCTGATGGAGAACTCGAAAGACCTGAGAAAAAACCTACCCTCAGCCTGCAAAAAGGAGAAAGTCACCCAGGAAGCAAGGCTAGTTTCTCGTACACCAGAATCAAGTCAGAACCCTCTAGTCCACGGCTAGCCTCCTCGCCGGTCCAGCACAACATGGGCCCAACCTTCCCAATGGGTCCATTCCTGTCACAGTTTGCTTTCTCCCAGGACATTTCTGTGGTACCACAAGCATCTGAGATTCTAGCAAAAATGTCAGAGCTGGTTCATCGCAGGCTACGCCATGGAGGGAACAGCTACCCTCCTGTCATCTACAGTCCTCTCATGCCCAAAGGAGCGACATGCTTTGAATGCAACATCACCTTCAATAATCTAGACAACTACTTAGTTCACAAGAAGCACTACTGCAACAGTCGCTGGCAGCACATGGCGAAGTCTCCAGATTTCTCCAGTGTACCTGACAAGGTGTCCGATGCCATAAGTCCAAACAGTGGCCACACTTCAGTCGGTATGCTCCCCGGATGCCTTCCATCAGAAACTGACAGTCATCTCGTGACAACAGCTTGCTTGAATTCATCTGTTTTGGATATTATGAACGCTGGTGGGAAAGTGCCAGAAAAAGACCTTCCTGGGCAAGTAAAGAAGGGTAATACACCAACAGGAGTCGAGGAACGGCTCGGCGGAAAACAGCCTGAGGTGAAGAGTCCTAGTACGTCTTTGGTGGACGGTGACAACGACCCAAACAAGACCACCTGTGAAGCATGTAATATCACCTTCAGCCGGCATGAAACGTACATGGTTCACAAGCAGTACTATTGTGCCACTCGCCATGATCCGCCCATGAAGCGCATGTCCTCGAAGGTGCCCGCCATGCAGCGGACCATGAGAACGCGTAAGAGGAGAAAGATGTACGAGATGTGTCTACCGGACCAAGAGCAGCGGCAGCCTATGGGGCCACAGCCAGGATTCTTGGGTATGCCCACTCTAGGAAATCCCTGTACATCCCAGGAAACGGTAGAAAGCCTGGCTGACCGCTTCCATCCACGATGTGACATCTTTCCGAGCCTCGTCCCAAAACACTTAGATGCTTCTCTTACCGTCTCCAAGCCTATTCTTGCCCCCAAAGGTAACACTATTGCAGACCCACAGGAACTAGATGCTCCAATAGATCTCAGCAAAAAGTGCTCACCTCTTCCTGACAAGTCATGCAACTCCCCCAAAAGACTCTTGGACTATCACGAATGTACCGTGTGCAAGATCAGTTTTAACAAAGTGGAGAACTACCTTGCCCATAAACAGAACTTTTGCCCTGTCACATCTGCTCAGCATGGCGAGATTGGCGGTCTGGAGCAGCCGATGTTCCCGGGCGTCAAGAGCGAAGGCAATAATTCAGAAGACATCTATGATAAGAGTTCTGTGAAATGCGAGAAAAATGGTGGCAACAAGTTGATGGTGCAGAACGGAGGCATGTTTCCACCACACCTCGGGCCGGCACCGGATCTGAAAGCTTTCGGTGACGCATCGCTCATGACTTCGAAAGATGAGAACAAGAACATGTTTTTGCCTCACTGTCTCTATCCTGGAGCAATAAAGAAGGTGAAAGGTACTGAGCCAATATCGCCGTATTTTGGGATAAAAAGCAGTGACTACATGGCAGGGAGTCTCGTTATGCAGGGTGAGGCGGCTGAGCAGGAGCAAAGCAGCAACGGCGCAGCTGAGACAGGCACAGAAACACCTGCGGCCAATGGCTGCCCCCATCCAGGCAAAGAGCCGCTGCCCCTGCTGCCCAAAAACAGGGGTATGGTGATTGTCAACGGCGGTCATAAAGAGGATCGCCAGACACCAGCAACTCCCCAACAAGAGAATCAGCCTCACAACACCTCTTCACCAGAGGAACAAACCTCTCCCACGTGGGGAGCCGAGAACCCTCCCGACCCAAACGAGAATGTATCGCCCACTTCGAAATCGCCCGTGGAGGAATCCGCACCTGCCGGTAAAGGCATAAATGGGTCGGCGCCGCCGACAGGCAGTGGGAAGTACTGCCGCCTCTGTGACATCCAGTTCAATAACTTGTCAAACTTTATCACTCACAAGAAATTTTACTGCTCATCACATGCCGCCGAGCATGTGAAATGAAATTCGCTCCCCTCCCCTCGTCTTTTTTTGGTACACGGTCGTGGAAATAGTGCATCACGCAGTTTTATATACTGCTTGTGGACAATCAAGAGaagcttcttcttctttcgTTATTTGAAGACTTAATGCaaaatgatgaagaaaaaaaaaatccaagtgTAATATTGGTGCCACTttcaccttttatttattttacaatcagTATTAATAGGAGTAGTGCtcttaatttaaattcaaagaaaGTTTATATCAGAGTTGTTTGTAATGTTAATGTATAGTCATTCTTGTGTAGCAGACATATTGTTTACAATGTACGTTAGGTTCAAGGAGACAATAGGCACAGGATACAAAACTGAAATGCGTTTTAGACCCAACAATAGCTACTGGAGCACTTGTGTATTCTTATTTGCTGGTACAGTTTTTTGTATATGTCAAAATGTCACTTGCAGTATGATTCTCTTGACTTCAGCCTTAAAACAGTTCGGAGGGATAACCAGGCACAACGCTGCAGCTCATGTTTTGGCATATACTGTACACATGGCTTTGCATATATATGTTGCTGTTTGTCTGTCTTTTCTTCGACTCAGAAGTGGATGTTTAAATGAGGATGGCAGCATTCTTGTATAGTACTTGTATTTCTGTTTGCTGATACACCTCTTGTTCtccctttttaaaaatttgctcTCAGCGCaatactttgtaaaaaaaaaaaacataaggaAAAAAAGGAGGAGGGCGGGAACAATGCGGAAAGCAGTATTATAAAGGGGGAAGAGCAGCTATTTCTtactcctgaaaaaaaaaatgaaattgtacAAAAAGCAGGTTTATCAATGGTGATTATTGATGGGTGGGACGAGACAAGGgaatactgtaaaaatgatcaTTCCAATGTCCttatgtaagaaaaatatttcttaaaaatgttgttgCTATGCATGTATATGGATGGAATAAAATTCCAGATCTGttggaaatttttattttgatgtggtGTCAATTAAACTTCAATCCTCAGGA

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252841.1 lncRNA upstream 6227 19702725 ~ 19719929 (+) True LOC122360931
TU169096 lncRNA upstream 43704 19682140 ~ 19682452 (+) True G114558
TU169094 lncRNA upstream 46470 19679383 ~ 19679686 (+) True G114556
TU169042 lncRNA upstream 77292 19647904 ~ 19648864 (+) True G114520
TU168842 lncRNA upstream 416942 19308264 ~ 19309214 (+) True G114379
XR_006252843.1 lncRNA downstream 144459 20009553 ~ 20010093 (+) True LOC122360959
TU169150 lncRNA downstream 151616 20016710 ~ 20018171 (+) True G114582
TU169139 lncRNA downstream 156635 20021729 ~ 20078782 (+) True G114578
TU169156 lncRNA downstream 161747 20026841 ~ 20029632 (+) True G114585
TU169169 lncRNA downstream 173480 20038574 ~ 20040588 (+) True G114589
XM_043261244.1 mRNA upstream 78855 19643829 ~ 19647301 (+) True LOC122360533
XM_043261239.1 mRNA upstream 82670 19541132 ~ 19643486 (+) False rims2a
XM_043261807.1 mRNA downstream 32692 19897786 ~ 20012359 (+) True oxr1a
XM_043261810.1 mRNA downstream 32692 19897786 ~ 20012359 (+) False oxr1a
XM_043261808.1 mRNA downstream 32725 19897819 ~ 20012359 (+) False oxr1a
XM_043261809.1 mRNA downstream 94808 19959902 ~ 20012359 (+) False oxr1a
XM_043261811.1 mRNA downstream 137183 20002277 ~ 20012359 (+) False oxr1a
TU169046 other upstream 78350 19645958 ~ 19647806 (+) False LOC122360533
TU168846 other upstream 397393 19327104 ~ 19328763 (+) True G114382
TU168814 other upstream 473110 19197804 ~ 19253046 (+) True G114352
TU168594 other upstream 885928 18827254 ~ 18840228 (+) False LOC122360132
TU168577 other upstream 905020 18809154 ~ 18821136 (+) True LOC122360692
XR_006252832.1 other downstream 354550 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 1273787 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 1984895 21849989 ~ 21872972 (+) False tgfbr2b
TU170042 other downstream 2018835 21883929 ~ 21894532 (+) False stt3b
TU170081 other downstream 2112023 21977117 ~ 21979368 (+) True G115193

Expression Profile